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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010893 | AP001490 | 52716818 | 1 | chr18 | NT_010893 | AC021561 | 52720211 | 3 | 71725 | 14263 | 10856 | 96844 |
| S/G/Y/R/B/O |
NT_010893 | AP001490 | 52716818 | 1 | chr18 | NT_024992 | AC016106 | 67564512 | 3 | 11512 | 13730 | 0 | 25242 |
| S/G/Y/R/B/O |
NT_010893 | AP001490 | 52716818 | 1 | chr18 | NT_010893 | AC022655 | 53896744 | 2 | 11794 | 13701 | 0 | 25495 |
| S/G/Y/R/B/O |
NT_010893 | AC021561 | 52720211 | 3 | chr18 | NT_010893 | AP001564 | 52896508 | 1 | 3073 | 10479 | 25001 | 38553 |
| S/G/Y/R/B/O |
NT_010893 | AP001564 | 52896508 | 1 | chr18 | NT_010893 | AC015524 | 52897758 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010893 | AP001564 | 52896508 | 1 | chr18 | NT_010893 | AC087395 | 53676178 | 3 | 27819 | 0 | 1198 | 29017 |
| S/G/Y/R/B/O |
NT_010893 | AP001564 | 52896508 | 1 | chr18 | NT_010893 | AC090897 | 53720195 | 2 | 128213 | 0 | 14300 | 142513 |
| S/G/Y/R/B/O |
NT_010893 | AP001564 | 52896508 | 1 |   |   | AC012359 | 52896508 | 1 | 76064 | 0 | 1192 | 77256 |
| S/G/Y/R/B/O |
NT_010893 | AP001564 | 52896508 | 1 |   |   | AC073049 | 53896744 | 1 | 72051 | 1960 | 1343 | 75354 |
| S/G/Y/R/B/O |
NT_010893 | AC015524 | 52897758 | 3 | chr18 | NT_010893 | AC011977 | 53076743 | 2 | 56236 | 0 | 0 | 56236 |
| S/G/Y/R/B/O |
NT_010893 | AC015524 | 52897758 | 3 | chr18 | NT_010893 | AC009285 | 53145185 | 2 | 25535 | 0 | 0 | 25535 |
| S/G/Y/R/B/O |
NT_010893 | AC015524 | 52897758 | 3 |   |   | AC021757 | 53076743 | 1 | 138918 | 0 | 0 | 138918 |
| S/G/Y/R/B/O |
NT_010893 | AC011977 | 53076743 | 2 | chr18 | NT_010893 | AC009285 | 53145185 | 2 | 93952 | 0 | 0 | 93952 |
| S/G/Y/R/B/O |
NT_010893 | AC011977 | 53076743 | 2 |   |   | AC021757 | 52897758 | 1 | 61582 | 0 | 0 | 61582 |
| S/G/Y/R/B/O |
NT_010893 | AC009285 | 53145185 | 2 | chr18 | NT_010893 | AC087224 | 53234445 | 1 | 26130 | 0 | 2219 | 28349 |
| S/G/Y/R/B/O |
NT_010893 | AC009285 | 53145185 | 2 | chr18 | NT_010893 | AC015524 | 52897758 | 3 | 25535 | 0 | 0 | 25535 |
| S/G/Y/R/B/O |
NT_010893 | AC009285 | 53145185 | 2 | chr18 | NT_010893 | AC026031 | 53267332 | 1 | 22806 | 2689 | 2092 | 27587 |
| S/G/Y/R/B/O |
NT_010893 | AC009285 | 53145185 | 2 |   |   | AC021757 | 52897758 | 1 | 61590 | 0 | 0 | 61590 |
| S/G/Y/R/B/O |
NT_010893 | AC087224 | 53234445 | 1 | chr18 | NT_010893 | AC026031 | 53267332 | 1 | 68393 | 7292 | 69880 | 145565 |
| S/G/Y/R/B/O |
NT_010893 | AC026031 | 53267332 | 1 | chr18 | NT_010893 | AC090666 | 53353354 | 3 | 4981 | 1503 | 0 | 6484 |
| S/G/Y/R/B/O |
NT_010893 | AC026031 | 53267332 | 1 | chr18 | NT_010893 | AC009285 | 53145185 | 2 | 22806 | 2689 | 2092 | 27587 |
| S/G/Y/R/B/O |
NT_010893 | AC090666 | 53353354 | 3 | chr18 | NT_010893 | AC021325 | 53464613 | 3 | 73806 | 0 | 0 | 73806 |
| S/G/Y/R/B/O |
NT_010893 | AC090666 | 53353354 | 3 | chr18 | NT_010893 | AC093462 | 53528034 | 2 | 26586 | 0 | 0 | 26586 |
| S/G/Y/R/B/O |
NT_010893 | AC090666 | 53353354 | 3 |   |   | AC021714 | 53464613 | 1 | 117605 | 0 | 47878 | 165483 |
| S/G/Y/R/B/O |
NT_010893 | AC090666 | 53353354 | 3 |   |   | AC074288 | 53267332 | 1 | 69785 | 6451 | 72890 | 149126 |
| S/G/Y/R/B/O |
NT_010893 | AC090666 | 53353354 | 3 |   |   | AP001498 | 53528034 | 1 | 16030 | 0 | 0 | 16030 |
| S/G/Y/R/B/O |
NT_010893 | AC090666 | 53353354 | 3 |   |   | AP002408 | 53528034 | 1 | 22637 | 1533 | 1144 | 25314 |
| S/G/Y/R/B/O |
NT_010893 | AC021325 | 53464613 | 3 | chr18 | NT_010893 | AC087688 | 53504219 | 1 | 117242 | 0 | 25489 | 142731 |
| S/G/Y/R/B/O |
NT_010893 | AC021325 | 53464613 | 3 | chr18 | NT_010893 | AC093462 | 53528034 | 2 | 132647 | 0 | 0 | 132647 |
| S/G/Y/R/B/O |
NT_010893 | AC021325 | 53464613 | 3 |   |   | AC021714 | 53528034 | 1 | 63836 | 0 | 0 | 63836 |
| S/G/Y/R/B/O |
NT_010893 | AC021325 | 53464613 | 3 |   |   | AC074288 | 53528034 | 1 | 26673 | 4170 | 31179 | 62022 |
| S/G/Y/R/B/O |
NT_010893 | AC021325 | 53464613 | 3 |   |   | AP001498 | 53528034 | 1 | 89499 | 2132 | 1589 | 93220 |
| S/G/Y/R/B/O |
NT_010893 | AC021325 | 53464613 | 3 |   |   | AP002408 | 53528034 | 1 | 80654 | 5232 | 3440 | 89326 |
| S/G/Y/R/B/O |
NT_010893 | AC087688 | 53504219 | 1 | chr18 | NT_010893 | AC093462 | 53528034 | 2 | 147725 | 0 | 0 | 147725 |
| S/G/Y/R/B/O |
NT_010893 | AC087688 | 53504219 | 1 |   |   | AP001498 | 53528034 | 1 | 158712 | 2132 | 1589 | 162433 |
| S/G/Y/R/B/O |
NT_010893 | AC087688 | 53504219 | 1 |   |   | AP002408 | 53528034 | 1 | 128187 | 3692 | 12550 | 144429 |
| S/G/Y/R/B/O |
NT_010893 | AC093462 | 53528034 | 2 | chr18 | NT_010893 | AC087395 | 53676178 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010893 | AC093462 | 53528034 | 2 | chr18 | NT_010893 | AC021325 | 53464613 | 3 | 132647 | 0 | 0 | 132647 |
| S/G/Y/R/B/O |
NT_010893 | AC093462 | 53528034 | 2 | chr18 | NT_010893 | AC090666 | 53353354 | 3 | 26586 | 0 | 0 | 26586 |
| S/G/Y/R/B/O |
NT_010893 | AC093462 | 53528034 | 2 |   |   | AC021714 | 53464613 | 1 | 16398 | 0 | 12418 | 28816 |
| S/G/Y/R/B/O |
NT_010893 | AC093462 | 53528034 | 2 |   |   | AC074288 | 53464613 | 1 | 14296 | 0 | 8458 | 22754 |
| S/G/Y/R/B/O |
NT_010893 | AC093462 | 53528034 | 2 |   |   | AP001498 | 53353354 | 1 | 93935 | 2135 | 88512 | 184582 |
| S/G/Y/R/B/O |
NT_010893 | AC093462 | 53528034 | 2 |   |   | AP002408 | 53353354 | 1 | 107188 | 4640 | 21058 | 132886 |
| S/G/Y/R/B/O |
NT_010893 | AC087395 | 53676178 | 3 | chr18 | NT_010893 | AC090897 | 53720195 | 2 | 19271 | 0 | 0 | 19271 |
| S/G/Y/R/B/O |
NT_010893 | AC087395 | 53676178 | 3 | chr18 | NT_010893 | AP001564 | 52896508 | 1 | 27819 | 0 | 1198 | 29017 |
| S/G/Y/R/B/O |
NT_010893 | AC087395 | 53676178 | 3 |   |   | AC012359 | 53353354 | 1 | 39859 | 0 | 2497 | 42356 |
| S/G/Y/R/B/O |
NT_010893 | AC087395 | 53676178 | 3 |   |   | AC073049 | 53353354 | 1 | 13914 | 0 | 1343 | 15257 |
| S/G/Y/R/B/O |
NT_010893 | AC087395 | 53676178 | 3 |   |   | AP001498 | 53720195 | 1 | 16390 | 0 | 7305 | 23695 |
| S/G/Y/R/B/O |
NT_010893 | AC090897 | 53720195 | 2 | chr18 | NT_010893 | AC022655 | 53896744 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010893 | AC090897 | 53720195 | 2 | chr18 | NT_010893 | AP001564 | 52896508 | 1 | 128213 | 0 | 14300 | 142513 |
| S/G/Y/R/B/O |
NT_010893 | AC090897 | 53720195 | 2 |   |   | AC012359 | 52896508 | 1 | 137127 | 0 | 2494 | 139621 |
| S/G/Y/R/B/O |
NT_010893 | AC090897 | 53720195 | 2 |   |   | AC073049 | 52896508 | 1 | 140470 | 1960 | 2475 | 144905 |
| S/G/Y/R/B/O |
NT_010893 | AC022655 | 53896744 | 2 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010893 | AC022655 | 53896744 | 2 | chr18 | NT_010893 | AP001490 | 52716818 | 1 | 11794 | 13701 | 0 | 25495 |
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