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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_011024 | AC011085 | 6725100 | 1 | chr18 | NT_011024 | AP002409 | 6829658 | 1 | 41463 | 0 | 6427 | 47890 |
| S/G/Y/R/B/O |
NT_011024 | AC011085 | 6725100 | 1 | chr18 | NT_011024 | AC007931 | 6833465 | 1 | 44841 | 1634 | 1494 | 47969 |
| S/G/Y/R/B/O |
NT_011024 | AC011085 | 6725100 | 1 | chr18 | NT_011024 | AP001027 | 6859407 | 1 | 27529 | 3742 | 5220 | 36491 |
| S/G/Y/R/B/O |
NT_011024 | AP002409 | 6829658 | 1 | chr18 | NT_011024 | AC007931 | 6833465 | 1 | 123229 | 5818 | 10408 | 139455 |
| S/G/Y/R/B/O |
NT_011024 | AP002409 | 6829658 | 1 | chr18 | NT_011024 | AP001027 | 6859407 | 1 | 64773 | 0 | 6509 | 71282 |
| S/G/Y/R/B/O |
NT_011024 | AP002409 | 6829658 | 1 |   |   | AL354765 | 7066070 | 2 | 22399 | 5903 | 2675 | 30977 |
| S/G/Y/R/B/O |
NT_011024 | AC007931 | 6833465 | 1 | chr18 | NT_011024 | AP001027 | 6859407 | 1 | 101184 | 7194 | 11125 | 119503 |
| S/G/Y/R/B/O |
NT_011024 | AC007931 | 6833465 | 1 | chr18 | NT_011024 | AC011085 | 6725100 | 1 | 44841 | 1634 | 1494 | 47969 |
| S/G/Y/R/B/O |
NT_011024 | AC007931 | 6833465 | 1 | chr18 | NT_011024 | AC021879 | 7066070 | 1 | 25794 | 0 | 0 | 25794 |
| S/G/Y/R/B/O |
NT_011024 | AP001027 | 6859407 | 1 | chr18 | NT_011024 | AC021879 | 7066070 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011024 | AP001027 | 6859407 | 1 | chr18 | NT_011024 | AC011085 | 6725100 | 1 | 27529 | 3742 | 5220 | 36491 |
| S/G/Y/R/B/O |
NT_011024 | AP001027 | 6859407 | 1 | chr18 | NT_011024 | AP002409 | 6829658 | 1 | 64773 | 0 | 6509 | 71282 |
| S/G/Y/R/B/O |
NT_011024 | AP001027 | 6859407 | 1 |   |   | AL354765 | 6725100 | 2 | 19849 | 5117 | 1429 | 26395 |
| S/G/Y/R/B/O |
NT_011024 | AC021879 | 7066070 | 1 | chr18 | NT_011024 | AC007902 | 7122832 | 1 | 9936 | 0 | 2550 | 12486 |
| S/G/Y/R/B/O |
NT_011024 | AC021879 | 7066070 | 1 | chr18 | NT_011024 | AC007931 | 6833465 | 1 | 25794 | 0 | 0 | 25794 |
| S/G/Y/R/B/O |
NT_011024 | AC021879 | 7066070 | 1 | chr18 | NT_011024 | AC040947 | 7171668 | 1 | 58032 | 11265 | 6000 | 75297 |
| S/G/Y/R/B/O |
NT_011024 | AC021879 | 7066070 | 1 |   |   | AL354765 | 7171668 | 2 | 122958 | 0 | 0 | 122958 |
| S/G/Y/R/B/O |
NT_011024 | AC007902 | 7122832 | 1 | chr18 | NT_011024 | AC040947 | 7171668 | 1 | 85236 | 1515 | 6400 | 93151 |
| S/G/Y/R/B/O |
NT_011024 | AC007902 | 7122832 | 1 | chr18 | NT_011024 | AP001095 | 7324409 | 1 | 33262 | 779 | 10958 | 44999 |
| S/G/Y/R/B/O |
NT_011024 | AC040947 | 7171668 | 1 | chr18 | NT_011024 | AP001095 | 7324409 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011024 | AC040947 | 7171668 | 1 | chr18 | NT_011024 | AC021879 | 7066070 | 1 | 58032 | 11265 | 6000 | 75297 |
| S/G/Y/R/B/O |
NT_011024 | AC040947 | 7171668 | 1 |   |   | AL354765 | 7066070 | 2 | 36058 | 9344 | 5075 | 50477 |
| S/G/Y/R/B/O |
NT_011024 | AP001095 | 7324409 | 1 | chr18 | NT_011024 | AP001091 | 7487487 | 1 | 11723 | 0 | 0 | 11723 |
| S/G/Y/R/B/O |
NT_011024 | AP001095 | 7324409 | 1 | chr18 | NT_011024 | AC007902 | 7122832 | 1 | 33262 | 779 | 10958 | 44999 |
| S/G/Y/R/B/O |
NT_011024 | AP001095 | 7324409 | 1 | chr18 | NT_011024 | AC036153 | 7545343 | 1 | 67960 | 3734 | 1265 | 72959 |
| S/G/Y/R/B/O |
NT_011024 | AP001091 | 7487487 | 1 | chr18 | NT_011024 | AC036153 | 7545343 | 1 | 66616 | 5134 | 2044 | 73794 |
| S/G/Y/R/B/O |
NT_011024 | AP001091 | 7487487 | 1 | chr18 | NT_011024 | AC016664 | 7686408 | 1 | 35329 | 0 | 0 | 35329 |
| S/G/Y/R/B/O |
NT_011024 | AP001091 | 7487487 | 1 | chr18 | NT_011024 | AP000897 | 7694532 | 1 | 46167 | 0 | 1273 | 47440 |
| S/G/Y/R/B/O |
NT_011024 | AC036153 | 7545343 | 1 | chr18 | NT_011024 | AC016664 | 7686408 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011024 | AC036153 | 7545343 | 1 | chr18 | NT_011024 | AP001095 | 7324409 | 1 | 67960 | 3734 | 1265 | 72959 |
| S/G/Y/R/B/O |
NT_011024 | AC016664 | 7686408 | 1 | chr18 | NT_011024 | AP000897 | 7694532 | 1 | 125904 | 7208 | 3602 | 136714 |
| S/G/Y/R/B/O |
NT_011024 | AC016664 | 7686408 | 1 | chr18 | NT_011024 | AP001091 | 7487487 | 1 | 35329 | 0 | 0 | 35329 |
| S/G/Y/R/B/O |
NT_011024 | AP000897 | 7694532 | 1 | chr18 | NT_011024 | AC013700 | 7810625 | 1 | 37167 | 0 | 0 | 37167 |
| S/G/Y/R/B/O |
NT_011024 | AP000897 | 7694532 | 1 | chr18 | NT_011024 | AP001091 | 7487487 | 1 | 46167 | 0 | 1273 | 47440 |
| S/G/Y/R/B/O |
NT_011024 | AC013700 | 7810625 | 1 | chr18 | NT_011024 | AC015957 | 7861934 | 1 | 118298 | 0 | 0 | 118298 |
| S/G/Y/R/B/O |
NT_011024 | AC015957 | 7861934 | 1 | chr18 | NT_011024 | AP001559 | 8000090 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011024 | AP001559 | 8000090 | 1 | chr18 | NT_011024 | AC006566 | 8032741 | 3 | 75899 | 7464 | 5493 | 88856 |
| S/G/Y/R/B/O |
NT_011024 | AC006566 | 8032741 | 3 |   |   |   |   |   |   |   |   |   |
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