|
| |
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
| |
| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033906 | AC091030 | 64003102 | 1 | chr18 | NT_033906 | AC008245 | 64004372 | 2 | 33503 | 0 | 0 | 33503 |
| S/G/Y/R/B/O |
NT_033906 | AC091030 | 64003102 | 1 | chr18 | NT_033906 | AC027506 | 64338686 | 3 | 18588 | 0 | 1152 | 19740 |
| S/G/Y/R/B/O |
NT_033906 | AC091030 | 64003102 | 1 | chr18 | NT_033906 | AC103693 | 64154567 | 3 | 193289 | 0 | 0 | 193289 |
| S/G/Y/R/B/O |
NT_033906 | AC008245 | 64004372 | 2 | chr18 | NT_033906 | AC103693 | 64154567 | 3 | 33503 | 0 | 0 | 33503 |
| S/G/Y/R/B/O |
NT_033906 | AC103693 | 64154567 | 3 | chr18 | NT_033906 | AC027506 | 64338686 | 3 | 9223 | 0 | 0 | 9223 |
| S/G/Y/R/B/O |
NT_033906 | AC103693 | 64154567 | 3 | chr18 | NT_033906 | AC091030 | 64003102 | 1 | 193289 | 0 | 0 | 193289 |
| S/G/Y/R/B/O |
NT_033906 | AC027506 | 64338686 | 3 | chr18 | NT_033906 | AC013604 | 64528467 | 2 | 31834 | 0 | 0 | 31834 |
| S/G/Y/R/B/O |
NT_033906 | AC027506 | 64338686 | 3 | chr18 | NT_033906 | AC091030 | 64003102 | 1 | 18588 | 0 | 1152 | 19740 |
| S/G/Y/R/B/O |
NT_033906 | AC013604 | 64528467 | 2 | chr18 | NT_033906 | AC090348 | 64663802 | 1 | 49114 | 0 | 0 | 49114 |
| S/G/Y/R/B/O |
NT_033906 | AC013604 | 64528467 | 2 | chr18 | NT_033906 | AP001398 | 64709463 | 1 | 48037 | 0 | 0 | 48037 |
| S/G/Y/R/B/O |
NT_033906 | AC013604 | 64528467 | 2 |   |   | AP001529 | 64709463 | 1 | 65366 | 0 | 12349 | 77715 |
| S/G/Y/R/B/O |
NT_033906 | AC090348 | 64663802 | 1 | chr18 | NT_033906 | AP001398 | 64709463 | 1 | 183116 | 0 | 548 | 183664 |
| S/G/Y/R/B/O |
NT_033906 | AC090348 | 64663802 | 1 | chr18 | NT_033906 | AC007948 | 64782056 | 3 | 16622 | 0 | 0 | 16622 |
| S/G/Y/R/B/O |
NT_033906 | AC090348 | 64663802 | 1 |   |   | AP001529 | 64709463 | 1 | 95995 | 1659 | 15351 | 113005 |
| S/G/Y/R/B/O |
NT_033906 | AP001398 | 64709463 | 1 | chr18 | NT_033906 | AC007948 | 64782056 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033906 | AP001398 | 64709463 | 1 | chr18 | NT_033906 | AC013604 | 64528467 | 2 | 48037 | 0 | 0 | 48037 |
| S/G/Y/R/B/O |
NT_033906 | AP001398 | 64709463 | 1 |   |   | AP001529 | 64663802 | 1 | 90458 | 0 | 0 | 90458 |
| S/G/Y/R/B/O |
NT_033906 | AC007948 | 64782056 | 3 | chr18 | NT_033906 | AC007631 | 64881184 | 3 | 49737 | 0 | 0 | 49737 |
| S/G/Y/R/B/O |
NT_033906 | AC007948 | 64782056 | 3 | chr18 | NT_033906 | AC090348 | 64663802 | 1 | 16622 | 0 | 0 | 16622 |
| S/G/Y/R/B/O |
NT_033906 | AC007948 | 64782056 | 3 |   |   | AC090701 | 64663802 | 3 | 68795 | 0 | 0 | 68795 |
| S/G/Y/R/B/O |
NT_033906 | AC007948 | 64782056 | 3 |   |   | AP001568 | 64663802 | 1 | 55831 | 2842 | 0 | 58673 |
| S/G/Y/R/B/O |
NT_033906 | AC007948 | 64782056 | 3 |   |   | AP001589 | 64663802 | 1 | 49432 | 4224 | 8633 | 62289 |
| S/G/Y/R/B/O |
NT_033906 | AC007631 | 64881184 | 3 | chr18 | NT_033906 | AC091108 | 64977988 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033906 | AC007631 | 64881184 | 3 |   |   | AC090701 | 64782056 | 3 | 146587 | 0 | 0 | 146587 |
| S/G/Y/R/B/O |
NT_033906 | AC007631 | 64881184 | 3 |   |   | AC090927 | 64782056 | 1 | 72439 | 0 | 0 | 72439 |
| S/G/Y/R/B/O |
NT_033906 | AC007631 | 64881184 | 3 |   |   | AP001392 | 64782056 | 1 | 37436 | 0 | 0 | 37436 |
| S/G/Y/R/B/O |
NT_033906 | AC007631 | 64881184 | 3 |   |   | AP001568 | 64782056 | 1 | 123129 | 1442 | 1383 | 125954 |
| S/G/Y/R/B/O |
NT_033906 | AC007631 | 64881184 | 3 |   |   | AP001589 | 64782056 | 1 | 64174 | 6292 | 40807 | 111273 |
| S/G/Y/R/B/O |
NT_033906 | AC091108 | 64977988 | 3 | chr18 | NT_033906 | AC027489 | 65117296 | 1 | 99818 | 2676 | 0 | 102494 |
| S/G/Y/R/B/O |
NT_033906 | AC091108 | 64977988 | 3 | chr18 | NT_033906 | AP001902 | 65724539 | 1 | 37519 | 0 | 235 | 37754 |
| S/G/Y/R/B/O |
NT_033906 | AC091108 | 64977988 | 3 |   |   | AC090701 | 65117296 | 3 | 48148 | 0 | 0 | 48148 |
| S/G/Y/R/B/O |
NT_033906 | AC091108 | 64977988 | 3 |   |   | AC090927 | 65117296 | 1 | 151138 | 2046 | 0 | 153184 |
| S/G/Y/R/B/O |
NT_033906 | AC091108 | 64977988 | 3 |   |   | AP001392 | 65117296 | 1 | 156291 | 0 | 1367 | 157658 |
| S/G/Y/R/B/O |
NT_033906 | AC091108 | 64977988 | 3 |   |   | AP001565 | 65117296 | 1 | 139009 | 2552 | 21815 | 163376 |
| S/G/Y/R/B/O |
NT_033906 | AC091108 | 64977988 | 3 |   |   | AP001568 | 65117296 | 1 | 41850 | 0 | 0 | 41850 |
| S/G/Y/R/B/O |
NT_033906 | AC091108 | 64977988 | 3 |   |   | AP001589 | 65117296 | 1 | 24270 | 0 | 11843 | 36113 |
| S/G/Y/R/B/O |
NT_033906 | AC091108 | 64977988 | 3 |   |   | AP001913 | 65724539 | 1 | 127565 | 6876 | 1251 | 135692 |
| S/G/Y/R/B/O |
NT_033906 | AC027489 | 65117296 | 1 | chr18 | NT_033906 | AC016040 | 65133063 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033906 | AC027489 | 65117296 | 1 | chr18 | NT_033906 | AP001902 | 65724539 | 1 | 142336 | 0 | 0 | 142336 |
| S/G/Y/R/B/O |
NT_033906 | AC027489 | 65117296 | 1 |   |   | AC090927 | 49591903 | 1 | 70230 | 2046 | 0 | 72276 |
| S/G/Y/R/B/O |
NT_033906 | AC027489 | 65117296 | 1 |   |   | AP001392 | 65680707 | 1 | 48741 | 0 | 1367 | 50108 |
| S/G/Y/R/B/O |
NT_033906 | AC027489 | 65117296 | 1 |   |   | AP001565 | 65680707 | 1 | 48508 | 2552 | 20321 | 71381 |
| S/G/Y/R/B/O |
NT_033906 | AC027489 | 65117296 | 1 |   |   | AP001913 | 65724539 | 1 | 91475 | 11935 | 1888 | 105298 |
| S/G/Y/R/B/O |
NT_033906 | AC016040 | 65133063 | 1 | chr18 | NT_033906 | AC023394 | 65209924 | 3 | 0 | 0 | 74398 | 74398 |
| S/G/Y/R/B/O |
NT_033906 | AC016040 | 65133063 | 1 |   |   | AC080101 | 65209924 | 1 | 33623 | 0 | 1189 | 34812 |
| S/G/Y/R/B/O |
NT_033906 | AC023394 | 65209924 | 3 | chr18 | NT_033906 | AC090358 | 65367972 | 1 | 28893 | 0 | 0 | 28893 |
| S/G/Y/R/B/O |
NT_033906 | AC023394 | 65209924 | 3 | chr18 | NT_033911 | AC007632 | 65803392 | 3 | 24136 | 0 | 0 | 24136 |
| S/G/Y/R/B/O |
NT_033906 | AC023394 | 65209924 | 3 |   |   | AP001532 | 65367972 | 1 | 21282 | 4883 | 0 | 26165 |
| S/G/Y/R/B/O |
NT_033906 | AC090358 | 65367972 | 1 | chr18 | NT_033906 | AP001400 | 65432126 | 1 | 124922 | 4575 | 0 | 129497 |
| S/G/Y/R/B/O |
NT_033906 | AC090358 | 65367972 | 1 |   |   | AP001532 | 65432126 | 1 | 146905 | 6622 | 5777 | 159304 |
| S/G/Y/R/B/O |
NT_033906 | AP001400 | 65432126 | 1 | chr18 | NT_033906 | AC016098 | 65514866 | 3 | 45496 | 1802 | 0 | 47298 |
| S/G/Y/R/B/O |
NT_033906 | AP001400 | 65432126 | 1 | chr18 | NT_033906 | AC114688 | 65680707 | 2 | 28103 | 1801 | 12325 | 42229 |
| S/G/Y/R/B/O |
NT_033906 | AP001400 | 65432126 | 1 |   |   | AP001532 | 65680707 | 1 | 63839 | 4541 | 18783 | 87163 |
| S/G/Y/R/B/O |
NT_033906 | AC016098 | 65514866 | 3 | chr18 | NT_033906 | AC011722 | 65653674 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033906 | AC016098 | 65514866 | 3 | chr18 | NT_033906 | AC114688 | 65680707 | 2 | 150800 | 0 | 0 | 150800 |
| S/G/Y/R/B/O |
NT_033906 | AC011722 | 65653674 | 2 | chr18 | NT_033906 | AC114688 | 65680707 | 2 | 26978 | 0 | 0 | 26978 |
| S/G/Y/R/B/O |
NT_033906 | AC114688 | 65680707 | 2 | chr18 | NT_033906 | AP001902 | 65724539 | 1 | 3090 | 0 | 0 | 3090 |
| S/G/Y/R/B/O |
NT_033906 | AC114688 | 65680707 | 2 | chr18 | NT_033906 | AC016098 | 65514866 | 3 | 150800 | 0 | 0 | 150800 |
| S/G/Y/R/B/O |
NT_033906 | AC114688 | 65680707 | 2 | chr18 | NT_033906 | AP001400 | 65432126 | 1 | 28103 | 1801 | 12325 | 42229 |
| S/G/Y/R/B/O |
NT_033906 | AP001902 | 65724539 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033906 | AP001902 | 65724539 | 1 | chr18 | NT_033906 | AC027489 | 65117296 | 1 | 142336 | 0 | 0 | 142336 |
| S/G/Y/R/B/O |
NT_033906 | AP001902 | 65724539 | 1 | chr18 | NT_033906 | AC091108 | 64977988 | 3 | 37519 | 0 | 235 | 37754 |
| S/G/Y/R/B/O |
NT_033906 | AP001902 | 65724539 | 1 |   |   | AC090927 | 65117296 | 1 | 13514 | 1814 | 0 | 15328 |
| S/G/Y/R/B/O |
NT_033906 | AP001902 | 65724539 | 1 |   |   | AP001392 | 65680707 | 1 | 56842 | 1812 | 0 | 58654 |
| S/G/Y/R/B/O |
NT_033906 | AP001902 | 65724539 | 1 |   |   | AP001565 | 65680707 | 1 | 51606 | 0 | 235 | 51841 |
| S/G/Y/R/B/O |
NT_033906 | AP001902 | 65724539 | 1 |   |   | AP001913 | 65680707 | 1 | 51520 | 11760 | 1888 | 65168 |
| |
|
|
|