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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010895 | AC022726 | 62862218 | 1 | chr18 | NT_010895 | AP001534 | 62964892 | 1 | 36225 | 11418 | 20412 | 68055 |
| S/G/Y/R/B/O |
NT_010895 | AC022726 | 62862218 | 1 | chr18 | NT_010895 | AC021803 | 62993535 | 3 | 15590 | 0 | 0 | 15590 |
| S/G/Y/R/B/O |
NT_010895 | AC022726 | 62862218 | 1 |   |   | AF325194 | 62993535 | 3 | 14194 | 0 | 0 | 14194 |
| S/G/Y/R/B/O |
NT_010895 | AP001534 | 62964892 | 1 | chr18 | NT_010895 | AP001915 | 62983806 | 1 | 59304 | 7257 | 27547 | 94108 |
| S/G/Y/R/B/O |
NT_010895 | AP001534 | 62964892 | 1 | chr18 | NT_010895 | AC021803 | 62993535 | 3 | 85029 | 7309 | 2015 | 94353 |
| S/G/Y/R/B/O |
NT_010895 | AP001534 | 62964892 | 1 |   |   | AC009267 | 62983806 | 3 | 53060 | 2647 | 1996 | 57703 |
| S/G/Y/R/B/O |
NT_010895 | AP001915 | 62983806 | 1 | chr18 | NT_010895 | AC021803 | 62993535 | 3 | 103444 | 1890 | 1154 | 106488 |
| S/G/Y/R/B/O |
NT_010895 | AP001915 | 62983806 | 1 | chr18 | NT_010895 | AC036176 | 63110695 | 3 | 39185 | 1550 | 0 | 40735 |
| S/G/Y/R/B/O |
NT_010895 | AP001915 | 62983806 | 1 |   |   | AC009267 | 45514753 | 3 | 109206 | 1550 | 1153 | 111909 |
| S/G/Y/R/B/O |
NT_010895 | AC021803 | 62993535 | 3 | chr18 | NT_010895 | AC036176 | 63110695 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010895 | AC021803 | 62993535 | 3 | chr18 | NT_010895 | AC022726 | 62862218 | 1 | 15590 | 0 | 0 | 15590 |
| S/G/Y/R/B/O |
NT_010895 | AC021803 | 62993535 | 3 | chr18 | NT_010895 | AP001534 | 62964892 | 1 | 85029 | 7309 | 2015 | 94353 |
| S/G/Y/R/B/O |
NT_010895 | AC021803 | 62993535 | 3 |   |   | AC009267 | 62964892 | 3 | 71206 | 0 | 0 | 71206 |
| S/G/Y/R/B/O |
NT_010895 | AC036176 | 63110695 | 3 | chr18 | NT_010895 | AC090307 | 63281854 | 2 | 66092 | 0 | 0 | 66092 |
| S/G/Y/R/B/O |
NT_010895 | AC036176 | 63110695 | 3 | chr18 | NT_010895 | AP001915 | 62983806 | 1 | 39185 | 1550 | 0 | 40735 |
| S/G/Y/R/B/O |
NT_010895 | AC036176 | 63110695 | 3 |   |   | AC009267 | 62983806 | 3 | 119720 | 0 | 0 | 119720 |
| S/G/Y/R/B/O |
NT_010895 | AC036176 | 63110695 | 3 |   |   | AC019355 | 62983806 | 1 | 34943 | 2730 | 0 | 37673 |
| S/G/Y/R/B/O |
NT_010895 | AC036176 | 63110695 | 3 |   |   | AF282904 | 63281854 | 3 | 37617 | 0 | 0 | 37617 |
| S/G/Y/R/B/O |
NT_010895 | AC036176 | 63110695 | 3 |   |   | AP001404 | 63281854 | 1 | 47127 | 2836 | 484 | 50447 |
| S/G/Y/R/B/O |
NT_010895 | AC090307 | 63281854 | 2 | chr18 | NT_010895 | AC069356 | 63364803 | 2 | 21199 | 0 | 0 | 21199 |
| S/G/Y/R/B/O |
NT_010895 | AC090307 | 63281854 | 2 |   |   | AC019355 | 69058021 | 1 | 149857 | 2730 | 0 | 152587 |
| S/G/Y/R/B/O |
NT_010895 | AC090307 | 63281854 | 2 |   |   | AF216854 | 63364803 | 3 | 11269 | 0 | 0 | 11269 |
| S/G/Y/R/B/O |
NT_010895 | AC090307 | 63281854 | 2 |   |   | AJ278717 | 63364803 | 3 | 16572 | 0 | 0 | 16572 |
| S/G/Y/R/B/O |
NT_010895 | AC090307 | 63281854 | 2 |   |   | AP001404 | 63364803 | 1 | 162574 | 2836 | 3940 | 169350 |
| S/G/Y/R/B/O |
NT_010895 | AC090307 | 63281854 | 2 |   |   | AP001583 | 63364803 | 1 | 12584 | 0 | 0 | 12584 |
| S/G/Y/R/B/O |
NT_010895 | AC069356 | 63364803 | 2 | chr18 | NT_010895 | AC027524 | 63510022 | 1 | 48148 | 0 | 0 | 48148 |
| S/G/Y/R/B/O |
NT_010895 | AC069356 | 63364803 | 2 |   |   | AB035089 | 69058021 | 3 | 11516 | 0 | 0 | 11516 |
| S/G/Y/R/B/O |
NT_010895 | AC069356 | 63364803 | 2 |   |   | AC019355 | 69058021 | 1 | 21554 | 0 | 0 | 21554 |
| S/G/Y/R/B/O |
NT_010895 | AC069356 | 63364803 | 2 |   |   | AP001404 | 63281854 | 1 | 21206 | 0 | 0 | 21206 |
| S/G/Y/R/B/O |
NT_010895 | AC069356 | 63364803 | 2 |   |   | AP001583 | 63281854 | 1 | 109446 | 0 | 1010 | 110456 |
| S/G/Y/R/B/O |
NT_010895 | AC027524 | 63510022 | 1 | chr18 | NT_010895 | AC072051 | 63526191 | 2 | 44983 | 0 | 0 | 44983 |
| S/G/Y/R/B/O |
NT_010895 | AC027524 | 63510022 | 1 | chr18 | NT_010895 | AC009802 | 63683475 | 3 | 10337 | 0 | 0 | 10337 |
| S/G/Y/R/B/O |
NT_010895 | AC027524 | 63510022 | 1 |   |   | AP001583 | 63526191 | 1 | 16260 | 0 | 0 | 16260 |
| S/G/Y/R/B/O |
NT_010895 | AC072051 | 63526191 | 2 | chr18 | NT_010895 | AC009802 | 63683475 | 3 | 53703 | 0 | 0 | 53703 |
| S/G/Y/R/B/O |
NT_010895 | AC009802 | 63683475 | 3 | chr18 | NT_010895 | AC021607 | 63821165 | 3 | 72116 | 0 | 0 | 72116 |
| S/G/Y/R/B/O |
NT_010895 | AC009802 | 63683475 | 3 | chr18 | NT_010895 | AC027524 | 63510022 | 1 | 10337 | 0 | 0 | 10337 |
| S/G/Y/R/B/O |
NT_010895 | AC009802 | 63683475 | 3 | chr18 | NT_010895 | AC090224 | 63919328 | 1 | 149780 | 0 | 0 | 149780 |
| S/G/Y/R/B/O |
NT_010895 | AC009802 | 63683475 | 3 | chr18 | NT_010895 | AP001897 | 63916971 | 1 | 65460 | 5858 | 34231 | 105549 |
| S/G/Y/R/B/O |
NT_010895 | AC009802 | 63683475 | 3 | chr18 | NT_010895 | AP001906 | 63906231 | 1 | 40439 | 2688 | 21175 | 64302 |
| S/G/Y/R/B/O |
NT_010895 | AC009802 | 63683475 | 3 |   |   | AC067875 | 63510022 | 1 | 93800 | 0 | 0 | 93800 |
| S/G/Y/R/B/O |
NT_010895 | AC009802 | 63683475 | 3 |   |   | AP001503 | 63919328 | 1 | 99737 | 6013 | 7630 | 113380 |
| S/G/Y/R/B/O |
NT_010895 | AC021607 | 63821165 | 3 | chr18 | NT_010895 | AP001906 | 63906231 | 1 | 97539 | 2697 | 21170 | 121406 |
| S/G/Y/R/B/O |
NT_010895 | AC021607 | 63821165 | 3 | chr18 | NT_010895 | AC090224 | 63919328 | 1 | 115492 | 0 | 0 | 115492 |
| S/G/Y/R/B/O |
NT_010895 | AC021607 | 63821165 | 3 | chr18 | NT_010895 | AP001897 | 63916971 | 1 | 59066 | 5352 | 16136 | 80554 |
| S/G/Y/R/B/O |
NT_010895 | AC021607 | 63821165 | 3 |   |   | AC016401 | 63683475 | 3 | 86652 | 0 | 0 | 86652 |
| S/G/Y/R/B/O |
NT_010895 | AC021607 | 63821165 | 3 |   |   | AC067875 | 63683475 | 1 | 118597 | 0 | 0 | 118597 |
| S/G/Y/R/B/O |
NT_010895 | AC021607 | 63821165 | 3 |   |   | AP001503 | 63919328 | 1 | 104811 | 1904 | 2492 | 109207 |
| S/G/Y/R/B/O |
NT_010895 | AP001906 | 63906231 | 1 | chr18 | NT_010895 | AP001897 | 63916971 | 1 | 50551 | 9158 | 17731 | 77440 |
| S/G/Y/R/B/O |
NT_010895 | AP001906 | 63906231 | 1 | chr18 | NT_010895 | AC009802 | 63683475 | 3 | 40439 | 2688 | 21175 | 64302 |
| S/G/Y/R/B/O |
NT_010895 | AP001906 | 63906231 | 1 | chr18 | NT_010895 | AC090224 | 63919328 | 1 | 25579 | 2697 | 21083 | 49359 |
| S/G/Y/R/B/O |
NT_010895 | AP001906 | 63906231 | 1 |   |   | AC016401 | 63683475 | 3 | 85406 | 0 | 0 | 85406 |
| S/G/Y/R/B/O |
NT_010895 | AP001906 | 63906231 | 1 |   |   | AC067875 | 63821165 | 1 | 57551 | 2697 | 1318 | 61566 |
| S/G/Y/R/B/O |
NT_010895 | AP001906 | 63906231 | 1 |   |   | AP001503 | 63919328 | 1 | 104804 | 4013 | 2418 | 111235 |
| S/G/Y/R/B/O |
NT_010895 | AP001897 | 63916971 | 1 | chr18 | NT_010895 | AC090224 | 63919328 | 1 | 81137 | 14202 | 43445 | 138784 |
| S/G/Y/R/B/O |
NT_010895 | AP001897 | 63916971 | 1 | chr18 | NT_010895 | AC009802 | 63683475 | 3 | 65460 | 5858 | 34231 | 105549 |
| S/G/Y/R/B/O |
NT_010895 | AP001897 | 63916971 | 1 | chr18 | NT_010895 | AC021607 | 63821165 | 3 | 59066 | 5352 | 16136 | 80554 |
| S/G/Y/R/B/O |
NT_010895 | AP001897 | 63916971 | 1 |   |   | AC016401 | 63683475 | 3 | 24125 | 3397 | 14059 | 41581 |
| S/G/Y/R/B/O |
NT_010895 | AP001897 | 63916971 | 1 |   |   | AC067875 | 63821165 | 1 | 69694 | 5370 | 35197 | 110261 |
| S/G/Y/R/B/O |
NT_010895 | AP001897 | 63916971 | 1 |   |   | AP001503 | 63919328 | 1 | 61699 | 17381 | 33915 | 112995 |
| S/G/Y/R/B/O |
NT_010895 | AC090224 | 63919328 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010895 | AC090224 | 63919328 | 1 | chr18 | NT_010895 | AC009802 | 63683475 | 3 | 149780 | 0 | 0 | 149780 |
| S/G/Y/R/B/O |
NT_010895 | AC090224 | 63919328 | 1 | chr18 | NT_010895 | AC021607 | 63821165 | 3 | 115492 | 0 | 0 | 115492 |
| S/G/Y/R/B/O |
NT_010895 | AC090224 | 63919328 | 1 | chr18 | NT_010895 | AP001906 | 63906231 | 1 | 25579 | 2697 | 21083 | 49359 |
| S/G/Y/R/B/O |
NT_010895 | AC090224 | 63919328 | 1 |   |   | AC016401 | 43244830 | 3 | 45101 | 0 | 0 | 45101 |
| S/G/Y/R/B/O |
NT_010895 | AC090224 | 63919328 | 1 |   |   | AC067875 | 63821165 | 1 | 67910 | 0 | 0 | 67910 |
| S/G/Y/R/B/O |
NT_010895 | AC090224 | 63919328 | 1 |   |   | AP001503 | 43342410 | 1 | 100242 | 6026 | 3923 | 110191 |
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