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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_011036 | AC007941 | 2076018 | 1 | chr18 | NT_011036 | AC068734 | 2077024 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011036 | AC007941 | 2076018 | 1 | chr18 | NT_011036 | AC015566 | 2228543 | 1 | 131506 | 5394 | 340 | 137240 |
| S/G/Y/R/B/O |
NT_011036 | AC007941 | 2076018 | 1 | chr18 | NT_011036 | AC015958 | 2461377 | 1 | 26524 | 0 | 0 | 26524 |
| S/G/Y/R/B/O |
NT_011036 | AC007941 | 2076018 | 1 | chr18 | NT_011036 | AC068011 | 2131204 | 1 | 41302 | 2475 | 2154 | 45931 |
| S/G/Y/R/B/O |
NT_011036 | AC007941 | 2076018 | 1 | chr18 | NT_011036 | AP000898 | 2402207 | 1 | 38216 | 5071 | 8021 | 51308 |
| S/G/Y/R/B/O |
NT_011036 | AC007941 | 2076018 | 1 | chr18 | NT_011036 | AP000937 | 2403586 | 1 | 46574 | 4689 | 7004 | 58267 |
| S/G/Y/R/B/O |
NT_011036 | AC007941 | 2076018 | 1 | chr18 | NT_011036 | AP001011 | 2187737 | 1 | 69735 | 3465 | 11847 | 85047 |
| S/G/Y/R/B/O |
NT_011036 | AC068734 | 2077024 | 1 | chr18 | NT_011036 | AC025672 | 2095866 | 1 | 73144 | 7938 | 9113 | 90195 |
| S/G/Y/R/B/O |
NT_011036 | AC068734 | 2077024 | 1 | chr18 | NT_011036 | AC068011 | 2131204 | 1 | 11258 | 175 | 20209 | 31642 |
| S/G/Y/R/B/O |
NT_011036 | AC068734 | 2077024 | 1 | chr18 | NT_011036 | AC068523 | 3040245 | 1 | 97985 | 5362 | 12653 | 116000 |
| S/G/Y/R/B/O |
NT_011036 | AC025672 | 2095866 | 1 | chr18 | NT_011036 | AC068011 | 2131204 | 1 | 52023 | 7183 | 15532 | 74738 |
| S/G/Y/R/B/O |
NT_011036 | AC025672 | 2095866 | 1 | chr18 | NT_011036 | AC068523 | 3040245 | 1 | 33020 | 0 | 1367 | 34387 |
| S/G/Y/R/B/O |
NT_011036 | AC068011 | 2131204 | 1 | chr18 | NT_011036 | AP001011 | 2187737 | 1 | 13449 | 0 | 4651 | 18100 |
| S/G/Y/R/B/O |
NT_011036 | AC068011 | 2131204 | 1 | chr18 | NT_011036 | AC007941 | 2076018 | 1 | 41302 | 2475 | 2154 | 45931 |
| S/G/Y/R/B/O |
NT_011036 | AC068011 | 2131204 | 1 | chr18 | NT_011036 | AC015566 | 2228543 | 1 | 50959 | 4363 | 2474 | 57796 |
| S/G/Y/R/B/O |
NT_011036 | AC068011 | 2131204 | 1 | chr18 | NT_011036 | AC068734 | 2077024 | 1 | 11258 | 175 | 20209 | 31642 |
| S/G/Y/R/B/O |
NT_011036 | AP001011 | 2187737 | 1 | chr18 | NT_011036 | AC015566 | 2228543 | 1 | 106879 | 0 | 4287 | 111166 |
| S/G/Y/R/B/O |
NT_011036 | AP001011 | 2187737 | 1 | chr18 | NT_011036 | AC007941 | 2076018 | 1 | 69735 | 3465 | 11847 | 85047 |
| S/G/Y/R/B/O |
NT_011036 | AP001011 | 2187737 | 1 | chr18 | NT_011036 | AC015958 | 2461377 | 1 | 62301 | 0 | 6507 | 68808 |
| S/G/Y/R/B/O |
NT_011036 | AP001011 | 2187737 | 1 | chr18 | NT_011036 | AP000898 | 2402207 | 1 | 75496 | 6870 | 25545 | 107911 |
| S/G/Y/R/B/O |
NT_011036 | AP001011 | 2187737 | 1 | chr18 | NT_011036 | AP000919 | 2398559 | 1 | 16767 | 3813 | 25677 | 46257 |
| S/G/Y/R/B/O |
NT_011036 | AP001011 | 2187737 | 1 | chr18 | NT_011036 | AP000937 | 2403586 | 1 | 86876 | 9639 | 26087 | 122602 |
| S/G/Y/R/B/O |
NT_011036 | AP001011 | 2187737 | 1 | chr18 | NT_011036 | AP002446 | 2450226 | 1 | 14035 | 0 | 0 | 14035 |
| S/G/Y/R/B/O |
NT_011036 | AC015566 | 2228543 | 1 | chr18 | NT_011036 | AP000919 | 2398559 | 1 | 0 | 2279 | 9380 | 11659 |
| S/G/Y/R/B/O |
NT_011036 | AC015566 | 2228543 | 1 | chr18 | NT_011036 | AC007941 | 2076018 | 1 | 131506 | 5394 | 340 | 137240 |
| S/G/Y/R/B/O |
NT_011036 | AC015566 | 2228543 | 1 | chr18 | NT_011036 | AC015958 | 2461377 | 1 | 36084 | 0 | 0 | 36084 |
| S/G/Y/R/B/O |
NT_011036 | AC015566 | 2228543 | 1 | chr18 | NT_011036 | AC068011 | 2131204 | 1 | 50959 | 4363 | 2474 | 57796 |
| S/G/Y/R/B/O |
NT_011036 | AC015566 | 2228543 | 1 | chr18 | NT_011036 | AP000898 | 2402207 | 1 | 47076 | 5071 | 9247 | 61394 |
| S/G/Y/R/B/O |
NT_011036 | AC015566 | 2228543 | 1 | chr18 | NT_011036 | AP000937 | 2403586 | 1 | 45985 | 7571 | 14946 | 68502 |
| S/G/Y/R/B/O |
NT_011036 | AP000919 | 2398559 | 1 | chr18 | NT_011036 | AP000898 | 2402207 | 1 | 35208 | 11355 | 1266 | 47829 |
| S/G/Y/R/B/O |
NT_011036 | AP000919 | 2398559 | 1 | chr18 | NT_011036 | AC015958 | 2461377 | 1 | 59631 | 9307 | 1464 | 70402 |
| S/G/Y/R/B/O |
NT_011036 | AP000919 | 2398559 | 1 | chr18 | NT_011036 | AP000937 | 2403586 | 1 | 41640 | 10489 | 3529 | 55658 |
| S/G/Y/R/B/O |
NT_011036 | AP000919 | 2398559 | 1 | chr18 | NT_011036 | AP001011 | 2187737 | 1 | 16767 | 3813 | 25677 | 46257 |
| S/G/Y/R/B/O |
NT_011036 | AP000919 | 2398559 | 1 | chr18 | NT_011036 | AP001026 | 2469637 | 1 | 79889 | 1781 | 12728 | 94398 |
| S/G/Y/R/B/O |
NT_011036 | AP000919 | 2398559 | 1 | chr18 | NT_011036 | AP002446 | 2450226 | 1 | 132997 | 1623 | 1859 | 136479 |
| S/G/Y/R/B/O |
NT_011036 | AP000898 | 2402207 | 1 | chr18 | NT_011036 | AP000937 | 2403586 | 1 | 52808 | 14709 | 30117 | 97634 |
| S/G/Y/R/B/O |
NT_011036 | AP000898 | 2402207 | 1 | chr18 | NT_011036 | AC007941 | 2076018 | 1 | 38216 | 5071 | 8021 | 51308 |
| S/G/Y/R/B/O |
NT_011036 | AP000898 | 2402207 | 1 | chr18 | NT_011036 | AC015566 | 2228543 | 1 | 47076 | 5071 | 9247 | 61394 |
| S/G/Y/R/B/O |
NT_011036 | AP000898 | 2402207 | 1 | chr18 | NT_011036 | AC015958 | 2461377 | 1 | 42071 | 13653 | 5829 | 61553 |
| S/G/Y/R/B/O |
NT_011036 | AP000898 | 2402207 | 1 | chr18 | NT_011036 | AP001011 | 2187737 | 1 | 75496 | 6870 | 25545 | 107911 |
| S/G/Y/R/B/O |
NT_011036 | AP000898 | 2402207 | 1 | chr18 | NT_011036 | AP002446 | 2450226 | 1 | 29365 | 5100 | 779 | 35244 |
| S/G/Y/R/B/O |
NT_011036 | AP000937 | 2403586 | 1 | chr18 | NT_011036 | AP002446 | 2450226 | 1 | 38039 | 5346 | 3540 | 46925 |
| S/G/Y/R/B/O |
NT_011036 | AP000937 | 2403586 | 1 | chr18 | NT_011036 | AC007941 | 2076018 | 1 | 46574 | 4689 | 7004 | 58267 |
| S/G/Y/R/B/O |
NT_011036 | AP000937 | 2403586 | 1 | chr18 | NT_011036 | AC015566 | 2228543 | 1 | 45985 | 7571 | 14946 | 68502 |
| S/G/Y/R/B/O |
NT_011036 | AP000937 | 2403586 | 1 | chr18 | NT_011036 | AC015958 | 2461377 | 1 | 37595 | 13913 | 8807 | 60315 |
| S/G/Y/R/B/O |
NT_011036 | AP000937 | 2403586 | 1 | chr18 | NT_011036 | AP000919 | 2398559 | 1 | 41640 | 10489 | 3529 | 55658 |
| S/G/Y/R/B/O |
NT_011036 | AP000937 | 2403586 | 1 | chr18 | NT_011036 | AP001011 | 2187737 | 1 | 86876 | 9639 | 26087 | 122602 |
| S/G/Y/R/B/O |
NT_011036 | AP002446 | 2450226 | 1 | chr18 | NT_011036 | AC015958 | 2461377 | 1 | 41309 | 1821 | 7158 | 50288 |
| S/G/Y/R/B/O |
NT_011036 | AP002446 | 2450226 | 1 | chr18 | NT_011036 | AP000898 | 2402207 | 1 | 29365 | 5100 | 779 | 35244 |
| S/G/Y/R/B/O |
NT_011036 | AP002446 | 2450226 | 1 | chr18 | NT_011036 | AP000919 | 2398559 | 1 | 132997 | 1623 | 1859 | 136479 |
| S/G/Y/R/B/O |
NT_011036 | AP002446 | 2450226 | 1 | chr18 | NT_011036 | AP001011 | 2187737 | 1 | 14035 | 0 | 0 | 14035 |
| S/G/Y/R/B/O |
NT_011036 | AP002446 | 2450226 | 1 | chr18 | NT_011036 | AP001026 | 2469637 | 1 | 62544 | 0 | 1459 | 64003 |
| S/G/Y/R/B/O |
NT_011036 | AC015958 | 2461377 | 1 | chr18 | NT_011036 | AP001026 | 2469637 | 1 | 11444 | 0 | 9728 | 21172 |
| S/G/Y/R/B/O |
NT_011036 | AC015958 | 2461377 | 1 | chr18 | NT_011036 | AC007941 | 2076018 | 1 | 26524 | 0 | 0 | 26524 |
| S/G/Y/R/B/O |
NT_011036 | AC015958 | 2461377 | 1 | chr18 | NT_011036 | AC015566 | 2228543 | 1 | 36084 | 0 | 0 | 36084 |
| S/G/Y/R/B/O |
NT_011036 | AC015958 | 2461377 | 1 | chr18 | NT_011036 | AP000898 | 2402207 | 1 | 42071 | 13653 | 5829 | 61553 |
| S/G/Y/R/B/O |
NT_011036 | AC015958 | 2461377 | 1 | chr18 | NT_011036 | AP000919 | 2398559 | 1 | 59631 | 9307 | 1464 | 70402 |
| S/G/Y/R/B/O |
NT_011036 | AC015958 | 2461377 | 1 | chr18 | NT_011036 | AP000937 | 2403586 | 1 | 37595 | 13913 | 8807 | 60315 |
| S/G/Y/R/B/O |
NT_011036 | AC015958 | 2461377 | 1 | chr18 | NT_011036 | AP001011 | 2187737 | 1 | 62301 | 0 | 6507 | 68808 |
| S/G/Y/R/B/O |
NT_011036 | AP001026 | 2469637 | 1 | chr18 | NT_011036 | AC068381 | 2722555 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011036 | AP001026 | 2469637 | 1 | chr18 | NT_011036 | AP000919 | 2398559 | 1 | 79889 | 1781 | 12728 | 94398 |
| S/G/Y/R/B/O |
NT_011036 | AP001026 | 2469637 | 1 | chr18 | NT_011036 | AP002446 | 2450226 | 1 | 62544 | 0 | 1459 | 64003 |
| S/G/Y/R/B/O |
NT_011036 | AC068381 | 2722555 | 1 | chr18 | NT_011036 | AP000945 | 2736235 | 1 | 138177 | 7890 | 1487 | 147554 |
| S/G/Y/R/B/O |
NT_011036 | AC068381 | 2722555 | 1 | chr18 | NT_011036 | AC009699 | 2854617 | 1 | 18486 | 2359 | 0 | 20845 |
| S/G/Y/R/B/O |
NT_011036 | AC068381 | 2722555 | 1 |   |   | AP000914 | 2854617 | 1 | 20215 | 4162 | 1462 | 25839 |
| S/G/Y/R/B/O |
NT_011036 | AP000945 | 2736235 | 1 | chr18 | NT_011036 | AC009699 | 2854617 | 1 | 70296 | 3504 | 0 | 73800 |
| S/G/Y/R/B/O |
NT_011036 | AP000945 | 2736235 | 1 | chr18 | NT_011036 | AP000940 | 2871256 | 1 | 58162 | 0 | 0 | 58162 |
| S/G/Y/R/B/O |
NT_011036 | AP000945 | 2736235 | 1 |   |   | AP000914 | 2722555 | 1 | 56861 | 6596 | 1462 | 64919 |
| S/G/Y/R/B/O |
NT_011036 | AC009699 | 2854617 | 1 | chr18 | NT_011036 | AP000940 | 2871256 | 1 | 95116 | 0 | 46434 | 141550 |
| S/G/Y/R/B/O |
NT_011036 | AC009699 | 2854617 | 1 | chr18 | NT_011036 | AC068381 | 2722555 | 1 | 18486 | 2359 | 0 | 20845 |
| S/G/Y/R/B/O |
NT_011036 | AC009699 | 2854617 | 1 |   |   | AP000914 | 3040245 | 1 | 58990 | 10284 | 14978 | 84252 |
| S/G/Y/R/B/O |
NT_011036 | AP000940 | 2871256 | 1 | chr18 | NT_011036 | AC068523 | 3040245 | 1 | 0 | 0 | 3192 | 3192 |
| S/G/Y/R/B/O |
NT_011036 | AP000940 | 2871256 | 1 | chr18 | NT_011036 | AP000945 | 2736235 | 1 | 58162 | 0 | 0 | 58162 |
| S/G/Y/R/B/O |
NT_011036 | AP000940 | 2871256 | 1 |   |   | AP000914 | 3040245 | 1 | 63294 | 12685 | 13881 | 89860 |
| S/G/Y/R/B/O |
NT_011036 | AC068523 | 3040245 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_011036 | AC068523 | 3040245 | 1 | chr18 | NT_011036 | AC025672 | 2095866 | 1 | 33020 | 0 | 1367 | 34387 |
| S/G/Y/R/B/O |
NT_011036 | AC068523 | 3040245 | 1 | chr18 | NT_011036 | AC068734 | 2077024 | 1 | 97985 | 5362 | 12653 | 116000 |
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