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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_024992 | AP001653 | 66491295 | 1 | chr18 | NT_024992 | AP001448 | 66493050 | 1 | 18134 | 0 | 1167 | 19301 |
| S/G/Y/R/B/O |
NT_024992 | AP001653 | 66491295 | 1 | chr18 | NT_024992 | AC090393 | 66494751 | 2 | 26420 | 0 | 1170 | 27590 |
| S/G/Y/R/B/O |
NT_024992 | AP001653 | 66491295 | 1 | chr18 | NT_024992 | AC091643 | 66679241 | 3 | 132781 | 3962 | 1015 | 137758 |
| S/G/Y/R/B/O |
NT_024992 | AP001653 | 66491295 | 1 | chr18 | NT_024992 | AC105282 | 66786772 | 2 | 54006 | 2387 | 1015 | 57408 |
| S/G/Y/R/B/O |
NT_024992 | AP001653 | 66491295 | 1 |   |   | AP001263 | 66786772 | 1 | 123710 | 3963 | 1016 | 128689 |
| S/G/Y/R/B/O |
NT_024992 | AP001448 | 66493050 | 1 | chr18 | NT_024992 | AC090393 | 66494751 | 2 | 180293 | 1596 | 0 | 181889 |
| S/G/Y/R/B/O |
NT_024992 | AP001448 | 66493050 | 1 | chr2 | NT_022300 | AC040937 | 94015854 | 2 | 19703 | 1594 | 0 | 21297 |
| S/G/Y/R/B/O |
NT_024992 | AP001448 | 66493050 | 1 | chr18 | NT_024992 | AC091643 | 66679241 | 3 | 10141 | 0 | 0 | 10141 |
| S/G/Y/R/B/O |
NT_024992 | AP001448 | 66493050 | 1 |   |   | AP001263 | 66679241 | 1 | 10135 | 0 | 0 | 10135 |
| S/G/Y/R/B/O |
NT_024992 | AC090393 | 66494751 | 2 | chr18 | NT_024992 | AC091643 | 66679241 | 3 | 10141 | 0 | 0 | 10141 |
| S/G/Y/R/B/O |
NT_024992 | AC090393 | 66494751 | 2 | chr2 | NT_022300 | AC040937 | 94015854 | 2 | 58626 | 0 | 0 | 58626 |
| S/G/Y/R/B/O |
NT_024992 | AC090393 | 66494751 | 2 | chr18 | NT_024992 | AP001653 | 66491295 | 1 | 26420 | 0 | 1170 | 27590 |
| S/G/Y/R/B/O |
NT_024992 | AC090393 | 66494751 | 2 |   |   | AP001263 | 66679241 | 1 | 10141 | 0 | 0 | 10141 |
| S/G/Y/R/B/O |
NT_024992 | AC091643 | 66679241 | 3 | chr18 | NT_024992 | AC105282 | 66786772 | 2 | 69836 | 0 | 0 | 69836 |
| S/G/Y/R/B/O |
NT_024992 | AC091643 | 66679241 | 3 | chr18 | NT_024992 | AP001448 | 66493050 | 1 | 10141 | 0 | 0 | 10141 |
| S/G/Y/R/B/O |
NT_024992 | AC091643 | 66679241 | 3 | chr18 | NT_024992 | AP001653 | 66491295 | 1 | 132781 | 3962 | 1015 | 137758 |
| S/G/Y/R/B/O |
NT_024992 | AC091643 | 66679241 | 3 |   |   | AP001263 | 66786772 | 1 | 147784 | 1571 | 0 | 149355 |
| S/G/Y/R/B/O |
NT_024992 | AC105282 | 66786772 | 2 | chr18 | NT_024992 | AC024303 | 66854455 | 1 | 74680 | 2514 | 19173 | 96367 |
| S/G/Y/R/B/O |
NT_024992 | AC105282 | 66786772 | 2 | chr18 | NT_024992 | AP001653 | 66491295 | 1 | 54006 | 2387 | 1015 | 57408 |
| S/G/Y/R/B/O |
NT_024992 | AC105282 | 66786772 | 2 |   |   | AP001263 | 66949185 | 1 | 40773 | 1570 | 0 | 42343 |
| S/G/Y/R/B/O |
NT_024992 | AC024303 | 66854455 | 1 | chr18 | NT_024992 | AC105221 | 66949185 | 2 | 47681 | 3836 | 249 | 51766 |
| S/G/Y/R/B/O |
NT_024992 | AC105221 | 66949185 | 2 | chr18 | NT_024992 | AC009891 | 66980471 | 3 | 112795 | 0 | 0 | 112795 |
| S/G/Y/R/B/O |
NT_024992 | AC105221 | 66949185 | 2 | chr18 | NT_024992 | AC087534 | 67175144 | 2 | 53116 | 0 | 0 | 53116 |
| S/G/Y/R/B/O |
NT_024992 | AC105221 | 66949185 | 2 |   |   | AP001777 | 19562051 | 1 | 20589 | 1687 | 1094 | 23370 |
| S/G/Y/R/B/O |
NT_024992 | AC009891 | 66980471 | 3 | chr18 | NT_024992 | AC087534 | 67175144 | 2 | 134994 | 0 | 0 | 134994 |
| S/G/Y/R/B/O |
NT_024992 | AC009891 | 66980471 | 3 | chr18 | NT_024992 | AC113195 | 67217114 | 2 | 14560 | 0 | 0 | 14560 |
| S/G/Y/R/B/O |
NT_024992 | AC009891 | 66980471 | 3 |   |   | AP001777 | 67217114 | 1 | 117257 | 1684 | 3699 | 122640 |
| S/G/Y/R/B/O |
NT_024992 | AC087534 | 67175144 | 2 | chr18 | NT_024992 | AC113195 | 67217114 | 2 | 41231 | 0 | 15258 | 56489 |
| S/G/Y/R/B/O |
NT_024992 | AC087534 | 67175144 | 2 | chr18 | NT_024992 | AC105221 | 66949185 | 2 | 53116 | 0 | 0 | 53116 |
| S/G/Y/R/B/O |
NT_024992 | AC087534 | 67175144 | 2 |   |   | AP001777 | 67217114 | 1 | 165876 | 1684 | 3708 | 171268 |
| S/G/Y/R/B/O |
NT_024992 | AC113195 | 67217114 | 2 | chr18 | NT_024992 | AC091042 | 67253624 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024992 | AC113195 | 67217114 | 2 | chr18 | NT_024992 | AC009891 | 66980471 | 3 | 14560 | 0 | 0 | 14560 |
| S/G/Y/R/B/O |
NT_024992 | AC113195 | 67217114 | 2 | chr18 | NT_024992 | AC110062 | 67713051 | 2 | 26666 | 0 | 0 | 26666 |
| S/G/Y/R/B/O |
NT_024992 | AC113195 | 67217114 | 2 |   |   | AP001777 | 67713051 | 1 | 51772 | 0 | 0 | 51772 |
| S/G/Y/R/B/O |
NT_024992 | AC091042 | 67253624 | 1 | chr18 | NT_024992 | AC110597 | 67290346 | 2 | 0 | 0 | 51248 | 51248 |
| S/G/Y/R/B/O |
NT_024992 | AC110597 | 67290346 | 2 | chr18 | NT_024992 | AC020560 | 67292274 | 1 | 28958 | 2235 | 12662 | 43855 |
| S/G/Y/R/B/O |
NT_024992 | AC110597 | 67290346 | 2 | chr18 | NT_024992 | AC022662 | 67507346 | 2 | 86609 | 0 | 0 | 86609 |
| S/G/Y/R/B/O |
NT_024992 | AC110597 | 67290346 | 2 |   |   | AC107987 | 67253624 | 2 | 40978 | 0 | 0 | 40978 |
| S/G/Y/R/B/O |
NT_024992 | AC020560 | 67292274 | 1 | chr18 | NT_024992 | AC022662 | 67507346 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024992 | AC022662 | 67507346 | 2 | chr18 | NT_024992 | AC016106 | 67564512 | 3 | 57026 | 0 | 0 | 57026 |
| S/G/Y/R/B/O |
NT_024992 | AC022662 | 67507346 | 2 | chr18 | NT_024992 | AC110597 | 67290346 | 2 | 86609 | 0 | 0 | 86609 |
| S/G/Y/R/B/O |
NT_024992 | AC022662 | 67507346 | 2 |   |   | AC107987 | 67564512 | 2 | 38764 | 0 | 0 | 38764 |
| S/G/Y/R/B/O |
NT_024992 | AC016106 | 67564512 | 3 | chr18 | NT_024992 | AC110062 | 67713051 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024992 | AC016106 | 67564512 | 3 | chr18 | NT_010893 | AP001490 | 52716818 | 1 | 11512 | 13730 | 0 | 25242 |
| S/G/Y/R/B/O |
NT_024992 | AC110062 | 67713051 | 2 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_024992 | AC110062 | 67713051 | 2 | chr18 | NT_024992 | AC113195 | 67217114 | 2 | 26666 | 0 | 0 | 26666 |
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