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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_024997 | AC093330 | 77167542 | 1 | chr18 | NT_024997 | AC021331 | 77170662 | 1 | 114506 | 0 | 0 | 114506 |
| S/G/Y/R/B/O |
NT_024997 | AC093330 | 77167542 | 1 | chr18 | NT_024997 | AC018529 | 77198599 | 1 | 61618 | 0 | 0 | 61618 |
| S/G/Y/R/B/O |
NT_024997 | AC093330 | 77167542 | 1 | chr18 | NT_024997 | AC027575 | 77184757 | 1 | 33129 | 0 | 0 | 33129 |
| S/G/Y/R/B/O |
NT_024997 | AC093330 | 77167542 | 1 | chr18 | NT_024997 | AP001649 | 77375292 | 1 | 133046 | 791 | 4427 | 138264 |
| S/G/Y/R/B/O |
NT_024997 | AC093330 | 77167542 | 1 | chr18 | NT_024997 | AP001773 | 77457436 | 1 | 110480 | 0 | 0 | 110480 |
| S/G/Y/R/B/O |
NT_024997 | AC093330 | 77167542 | 1 | chr18 | NT_024997 | AP001810 | 77273077 | 1 | 28738 | 0 | 0 | 28738 |
| S/G/Y/R/B/O |
NT_024997 | AC093330 | 77167542 | 1 |   |   | AP001853 | 77273077 | 1 | 94597 | 14679 | 19059 | 128335 |
| S/G/Y/R/B/O |
NT_024997 | AC021331 | 77170662 | 1 | chr18 | NT_024997 | AC027575 | 77184757 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024997 | AC021331 | 77170662 | 1 | chr18 | NT_024997 | AC018529 | 77198599 | 1 | 82099 | 0 | 0 | 82099 |
| S/G/Y/R/B/O |
NT_024997 | AC021331 | 77170662 | 1 | chr18 | NT_024997 | AP001649 | 77375292 | 1 | 67338 | 0 | 0 | 67338 |
| S/G/Y/R/B/O |
NT_024997 | AC021331 | 77170662 | 1 | chr18 | NT_024997 | AP001773 | 77457436 | 1 | 112739 | 0 | 0 | 112739 |
| S/G/Y/R/B/O |
NT_024997 | AC021331 | 77170662 | 1 | chr18 | NT_024997 | AP001810 | 77273077 | 1 | 67290 | 0 | 0 | 67290 |
| S/G/Y/R/B/O |
NT_024997 | AC021331 | 77170662 | 1 |   |   | AP001853 | 77273077 | 1 | 74843 | 14488 | 17932 | 107263 |
| S/G/Y/R/B/O |
NT_024997 | AC027575 | 77184757 | 1 | chr18 | NT_024997 | AC018529 | 77198599 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024997 | AC027575 | 77184757 | 1 | chr18 | NT_024997 | AC093330 | 77167542 | 1 | 33129 | 0 | 0 | 33129 |
| S/G/Y/R/B/O |
NT_024997 | AC027575 | 77184757 | 1 | chr18 | NT_024997 | AP001649 | 77375292 | 1 | 51623 | 0 | 0 | 51623 |
| S/G/Y/R/B/O |
NT_024997 | AC027575 | 77184757 | 1 |   |   | AP001853 | 77375292 | 1 | 14430 | 2019 | 1017 | 17466 |
| S/G/Y/R/B/O |
NT_024997 | AC018529 | 77198599 | 1 | chr18 | NT_024997 | AP001810 | 77273077 | 1 | 80713 | 0 | 60051 | 140764 |
| S/G/Y/R/B/O |
NT_024997 | AC018529 | 77198599 | 1 | chr18 | NT_024997 | AC021331 | 77170662 | 1 | 82099 | 0 | 0 | 82099 |
| S/G/Y/R/B/O |
NT_024997 | AC018529 | 77198599 | 1 | chr18 | NT_024997 | AC093330 | 77167542 | 1 | 61618 | 0 | 0 | 61618 |
| S/G/Y/R/B/O |
NT_024997 | AC018529 | 77198599 | 1 | chr18 | NT_024997 | AP001649 | 77375292 | 1 | 25750 | 0 | 0 | 25750 |
| S/G/Y/R/B/O |
NT_024997 | AC018529 | 77198599 | 1 | chr18 | NT_024997 | AP001773 | 77457436 | 1 | 58185 | 0 | 0 | 58185 |
| S/G/Y/R/B/O |
NT_024997 | AC018529 | 77198599 | 1 |   |   | AP001853 | 77273077 | 1 | 34621 | 4604 | 16926 | 56151 |
| S/G/Y/R/B/O |
NT_024997 | AP001810 | 77273077 | 1 | chr18 | NT_024997 | AP001649 | 77375292 | 1 | 22754 | 0 | 2532 | 25286 |
| S/G/Y/R/B/O |
NT_024997 | AP001810 | 77273077 | 1 | chr18 | NT_024997 | AC021331 | 77170662 | 1 | 67290 | 0 | 0 | 67290 |
| S/G/Y/R/B/O |
NT_024997 | AP001810 | 77273077 | 1 | chr18 | NT_024997 | AC093330 | 77167542 | 1 | 28738 | 0 | 0 | 28738 |
| S/G/Y/R/B/O |
NT_024997 | AP001810 | 77273077 | 1 | chr18 | NT_024997 | AP001773 | 77457436 | 1 | 44911 | 0 | 0 | 44911 |
| S/G/Y/R/B/O |
NT_024997 | AP001810 | 77273077 | 1 |   |   | AP001853 | 77457436 | 1 | 35578 | 8116 | 18007 | 61701 |
| S/G/Y/R/B/O |
NT_024997 | AP001649 | 77375292 | 1 | chr18 | NT_024997 | AP001773 | 77457436 | 1 | 89687 | 0 | 10343 | 100030 |
| S/G/Y/R/B/O |
NT_024997 | AP001649 | 77375292 | 1 | chr18 | NT_024997 | AC018529 | 77198599 | 1 | 25750 | 0 | 0 | 25750 |
| S/G/Y/R/B/O |
NT_024997 | AP001649 | 77375292 | 1 | chr18 | NT_024997 | AC021331 | 77170662 | 1 | 67338 | 0 | 0 | 67338 |
| S/G/Y/R/B/O |
NT_024997 | AP001649 | 77375292 | 1 | chr18 | NT_024997 | AC027575 | 77184757 | 1 | 51623 | 0 | 0 | 51623 |
| S/G/Y/R/B/O |
NT_024997 | AP001649 | 77375292 | 1 | chr18 | NT_024997 | AC093330 | 77167542 | 1 | 133046 | 791 | 4427 | 138264 |
| S/G/Y/R/B/O |
NT_024997 | AP001649 | 77375292 | 1 |   |   | AP001853 | 77273077 | 1 | 91948 | 16504 | 20197 | 128649 |
| S/G/Y/R/B/O |
NT_024997 | AP001773 | 77457436 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_024997 | AP001773 | 77457436 | 1 | chr18 | NT_024997 | AC018529 | 77198599 | 1 | 58185 | 0 | 0 | 58185 |
| S/G/Y/R/B/O |
NT_024997 | AP001773 | 77457436 | 1 | chr18 | NT_024997 | AC021331 | 77170662 | 1 | 112739 | 0 | 0 | 112739 |
| S/G/Y/R/B/O |
NT_024997 | AP001773 | 77457436 | 1 | chr18 | NT_024997 | AC093330 | 77167542 | 1 | 110480 | 0 | 0 | 110480 |
| S/G/Y/R/B/O |
NT_024997 | AP001773 | 77457436 | 1 | chr18 | NT_024997 | AP001810 | 77273077 | 1 | 44911 | 0 | 0 | 44911 |
| S/G/Y/R/B/O |
NT_024997 | AP001773 | 77457436 | 1 |   |   | AP001853 | 77273077 | 1 | 56866 | 12655 | 8217 | 77738 |
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