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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010879 | AC104423 | 79720189 | 3 | chr18 | NT_010879 | AC023090 | 79801192 | 1 | 84447 | 0 | 0 | 84447 |
| S/G/Y/R/B/O |
NT_010879 | AC104423 | 79720189 | 3 | chr18 | NT_010879 | AC044917 | 80648064 | 1 | 42548 | 0 | 0 | 42548 |
| S/G/Y/R/B/O |
NT_010879 | AC104423 | 79720189 | 3 | chr18 | NT_010879 | AP001908 | 79888979 | 1 | 10303 | 4306 | 0 | 14609 |
| S/G/Y/R/B/O |
NT_010879 | AC104423 | 79720189 | 3 |   |   | AP001839 | 79891104 | 1 | 20079 | 1864 | 0 | 21943 |
| S/G/Y/R/B/O |
NT_010879 | AC023090 | 79801192 | 1 | chr18 | NT_010879 | AP001908 | 79888979 | 1 | 44245 | 16517 | 23347 | 84109 |
| S/G/Y/R/B/O |
NT_010879 | AC023090 | 79801192 | 1 | chr18 | NT_010879 | AC018445 | 79949356 | 1 | 24454 | 0 | 4233 | 28687 |
| S/G/Y/R/B/O |
NT_010879 | AC023090 | 79801192 | 1 | chr18 | NT_010879 | AC044917 | 80648064 | 1 | 119118 | 3216 | 0 | 122334 |
| S/G/Y/R/B/O |
NT_010879 | AC023090 | 79801192 | 1 | chr18 | NT_010879 | AC090755 | 79891104 | 1 | 92187 | 2718 | 1058 | 95963 |
| S/G/Y/R/B/O |
NT_010879 | AC023090 | 79801192 | 1 |   |   | AP001839 | 79720189 | 1 | 59831 | 13656 | 8215 | 81702 |
| S/G/Y/R/B/O |
NT_010879 | AP001908 | 79888979 | 1 | chr18 | NT_010879 | AC090755 | 79891104 | 1 | 51210 | 16544 | 20739 | 88493 |
| S/G/Y/R/B/O |
NT_010879 | AP001908 | 79888979 | 1 | chr18 | NT_010879 | AC013563 | 79959475 | 1 | 24701 | 0 | 762 | 25463 |
| S/G/Y/R/B/O |
NT_010879 | AP001908 | 79888979 | 1 | chr18 | NT_010879 | AC018445 | 79949356 | 1 | 46758 | 4584 | 15881 | 67223 |
| S/G/Y/R/B/O |
NT_010879 | AP001908 | 79888979 | 1 | chr18 | NT_010879 | AC044917 | 80648064 | 1 | 61362 | 16519 | 14895 | 92776 |
| S/G/Y/R/B/O |
NT_010879 | AP001908 | 79888979 | 1 | chr18 | NT_010879 | AC104423 | 79720189 | 3 | 10303 | 4306 | 0 | 14609 |
| S/G/Y/R/B/O |
NT_010879 | AP001908 | 79888979 | 1 |   |   | AP001839 | 79720189 | 1 | 44049 | 20528 | 1628 | 66205 |
| S/G/Y/R/B/O |
NT_010879 | AC090755 | 79891104 | 1 | chr18 | NT_010879 | AC018445 | 79949356 | 1 | 56045 | 0 | 17408 | 73453 |
| S/G/Y/R/B/O |
NT_010879 | AC090755 | 79891104 | 1 | chr18 | NT_010879 | AC013563 | 79959475 | 1 | 17731 | 0 | 0 | 17731 |
| S/G/Y/R/B/O |
NT_010879 | AC090755 | 79891104 | 1 | chr18 | NT_010879 | AC023090 | 79801192 | 1 | 92187 | 2718 | 1058 | 95963 |
| S/G/Y/R/B/O |
NT_010879 | AC090755 | 79891104 | 1 | chr18 | NT_010879 | AC044917 | 80648064 | 1 | 137241 | 2718 | 1044 | 141003 |
| S/G/Y/R/B/O |
NT_010879 | AC090755 | 79891104 | 1 |   |   | AP001839 | 79720189 | 1 | 75426 | 15395 | 15154 | 105975 |
| S/G/Y/R/B/O |
NT_010879 | AC018445 | 79949356 | 1 | chr18 | NT_010879 | AC013563 | 79959475 | 1 | 91134 | 0 | 6291 | 97425 |
| S/G/Y/R/B/O |
NT_010879 | AC018445 | 79949356 | 1 | chr18 | NT_010879 | AC023090 | 79801192 | 1 | 24454 | 0 | 4233 | 28687 |
| S/G/Y/R/B/O |
NT_010879 | AC018445 | 79949356 | 1 | chr18 | NT_010879 | AC044917 | 80648064 | 1 | 58600 | 1577 | 17921 | 78098 |
| S/G/Y/R/B/O |
NT_010879 | AC018445 | 79949356 | 1 | chr18 | NT_010879 | AP001908 | 79888979 | 1 | 46758 | 4584 | 15881 | 67223 |
| S/G/Y/R/B/O |
NT_010879 | AC018445 | 79949356 | 1 |   |   | AP001839 | 79891104 | 1 | 44780 | 2193 | 11997 | 58970 |
| S/G/Y/R/B/O |
NT_010879 | AC013563 | 79959475 | 1 | chr18 | NT_010879 | AC068473 | 79972744 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010879 | AC013563 | 79959475 | 1 | chr18 | NT_010879 | AC044917 | 80648064 | 1 | 11269 | 0 | 0 | 11269 |
| S/G/Y/R/B/O |
NT_010879 | AC013563 | 79959475 | 1 | chr18 | NT_010879 | AC090755 | 79891104 | 1 | 17731 | 0 | 0 | 17731 |
| S/G/Y/R/B/O |
NT_010879 | AC013563 | 79959475 | 1 | chr18 | NT_010879 | AP001908 | 79888979 | 1 | 24701 | 0 | 762 | 25463 |
| S/G/Y/R/B/O |
NT_010879 | AC068473 | 79972744 | 1 | chr18 | NT_010879 | AP001641 | 79993263 | 1 | 36956 | 1540 | 1045 | 39541 |
| S/G/Y/R/B/O |
NT_010879 | AC068473 | 79972744 | 1 | chr18 | NT_010879 | AC021594 | 80003086 | 2 | 48467 | 0 | 0 | 48467 |
| S/G/Y/R/B/O |
NT_010879 | AC068473 | 79972744 | 1 | chr18 | NT_010879 | AC079059 | 80280822 | 1 | 26322 | 0 | 0 | 26322 |
| S/G/Y/R/B/O |
NT_010879 | AP001641 | 79993263 | 1 | chr18 | NT_010879 | AC021594 | 80003086 | 2 | 97554 | 3279 | 10115 | 110948 |
| S/G/Y/R/B/O |
NT_010879 | AP001641 | 79993263 | 1 | chr18 | NT_010879 | AC079059 | 80280822 | 1 | 34865 | 5957 | 7412 | 48234 |
| S/G/Y/R/B/O |
NT_010879 | AC021594 | 80003086 | 2 | chr18 | NT_010879 | AC018747 | 80165522 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010879 | AC021594 | 80003086 | 2 | chr18 | NT_010879 | AC068473 | 79972744 | 1 | 48467 | 0 | 0 | 48467 |
| S/G/Y/R/B/O |
NT_010879 | AC021594 | 80003086 | 2 | chr18 | NT_010879 | AC079059 | 80280822 | 1 | 122553 | 4122 | 5360 | 132035 |
| S/G/Y/R/B/O |
NT_010879 | AC018747 | 80165522 | 1 | chr18 | NT_010879 | AC068530 | 80173782 | 1 | 0 | 1968 | 21995 | 23963 |
| S/G/Y/R/B/O |
NT_010879 | AC018747 | 80165522 | 1 | chr18 | NT_010879 | AC010958 | 80335470 | 1 | 21424 | 0 | 0 | 21424 |
| S/G/Y/R/B/O |
NT_010879 | AC018747 | 80165522 | 1 | chr18 | NT_010879 | AC015668 | 80318259 | 1 | 21424 | 0 | 0 | 21424 |
| S/G/Y/R/B/O |
NT_010879 | AC018747 | 80165522 | 1 | chr18 | NT_010879 | AC090360 | 80411148 | 2 | 47973 | 0 | 1268 | 49241 |
| S/G/Y/R/B/O |
NT_010879 | AC018747 | 80165522 | 1 |   |   | AP001522 | 80411148 | 1 | 24717 | 6238 | 12914 | 43869 |
| S/G/Y/R/B/O |
NT_010879 | AC068530 | 80173782 | 1 | chr18 | NT_010879 | AC079059 | 80280822 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010879 | AC068530 | 80173782 | 1 | chr18 | NT_010879 | AC090360 | 80411148 | 2 | 39174 | 0 | 0 | 39174 |
| S/G/Y/R/B/O |
NT_010879 | AC068530 | 80173782 | 1 |   |   | AP001522 | 80411148 | 1 | 22378 | 0 | 6421 | 28799 |
| S/G/Y/R/B/O |
NT_010879 | AC079059 | 80280822 | 1 | chr18 | NT_010879 | AC015668 | 80318259 | 1 | 15911 | 0 | 0 | 15911 |
| S/G/Y/R/B/O |
NT_010879 | AC079059 | 80280822 | 1 | chr18 | NT_010879 | AC010958 | 80335470 | 1 | 15906 | 0 | 0 | 15906 |
| S/G/Y/R/B/O |
NT_010879 | AC079059 | 80280822 | 1 | chr18 | NT_010879 | AC021594 | 80003086 | 2 | 122553 | 4122 | 5360 | 132035 |
| S/G/Y/R/B/O |
NT_010879 | AC079059 | 80280822 | 1 | chr18 | NT_010879 | AC068473 | 79972744 | 1 | 26322 | 0 | 0 | 26322 |
| S/G/Y/R/B/O |
NT_010879 | AC079059 | 80280822 | 1 | chr18 | NT_010879 | AP001641 | 79993263 | 1 | 34865 | 5957 | 7412 | 48234 |
| S/G/Y/R/B/O |
NT_010879 | AC015668 | 80318259 | 1 | chr18 | NT_010879 | AC010958 | 80335470 | 1 | 121166 | 0 | 17598 | 138764 |
| S/G/Y/R/B/O |
NT_010879 | AC015668 | 80318259 | 1 | chr18 | NT_010879 | AC018747 | 80165522 | 1 | 21424 | 0 | 0 | 21424 |
| S/G/Y/R/B/O |
NT_010879 | AC015668 | 80318259 | 1 | chr18 | NT_010879 | AC090360 | 80411148 | 2 | 60606 | 0 | 0 | 60606 |
| S/G/Y/R/B/O |
NT_010879 | AC015668 | 80318259 | 1 |   |   | AP001522 | 80411148 | 1 | 42239 | 6885 | 5451 | 54575 |
| S/G/Y/R/B/O |
NT_010879 | AC010958 | 80335470 | 1 | chr18 | NT_010879 | AC090360 | 80411148 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010879 | AC010958 | 80335470 | 1 | chr18 | NT_010879 | AC018747 | 80165522 | 1 | 21424 | 0 | 0 | 21424 |
| S/G/Y/R/B/O |
NT_010879 | AC010958 | 80335470 | 1 | chr18 | NT_010879 | AC079059 | 80280822 | 1 | 15906 | 0 | 0 | 15906 |
| S/G/Y/R/B/O |
NT_010879 | AC010958 | 80335470 | 1 |   |   | AP001522 | 23037566 | 1 | 42239 | 6958 | 5455 | 54652 |
| S/G/Y/R/B/O |
NT_010879 | AC090360 | 80411148 | 2 | chr18 | NT_010879 | AC044917 | 80648064 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010879 | AC090360 | 80411148 | 2 | chr18 | NT_010879 | AC015668 | 80318259 | 1 | 60606 | 0 | 0 | 60606 |
| S/G/Y/R/B/O |
NT_010879 | AC090360 | 80411148 | 2 | chr18 | NT_010879 | AC018747 | 80165522 | 1 | 47973 | 0 | 1268 | 49241 |
| S/G/Y/R/B/O |
NT_010879 | AC090360 | 80411148 | 2 | chr18 | NT_010879 | AC068530 | 80173782 | 1 | 39174 | 0 | 0 | 39174 |
| S/G/Y/R/B/O |
NT_010879 | AC090360 | 80411148 | 2 |   |   | AP001522 | 80173782 | 1 | 85575 | 1527 | 7686 | 94788 |
| S/G/Y/R/B/O |
NT_010879 | AC044917 | 80648064 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010879 | AC044917 | 80648064 | 1 | chr18 | NT_010879 | AC013563 | 79959475 | 1 | 11269 | 0 | 0 | 11269 |
| S/G/Y/R/B/O |
NT_010879 | AC044917 | 80648064 | 1 | chr18 | NT_010879 | AC018445 | 79949356 | 1 | 58600 | 1577 | 17921 | 78098 |
| S/G/Y/R/B/O |
NT_010879 | AC044917 | 80648064 | 1 | chr18 | NT_010879 | AC023090 | 79801192 | 1 | 119118 | 3216 | 0 | 122334 |
| S/G/Y/R/B/O |
NT_010879 | AC044917 | 80648064 | 1 | chr18 | NT_010879 | AC090755 | 79891104 | 1 | 137241 | 2718 | 1044 | 141003 |
| S/G/Y/R/B/O |
NT_010879 | AC044917 | 80648064 | 1 | chr18 | NT_010879 | AC104423 | 79720189 | 3 | 42548 | 0 | 0 | 42548 |
| S/G/Y/R/B/O |
NT_010879 | AC044917 | 80648064 | 1 | chr18 | NT_010879 | AP001908 | 79888979 | 1 | 61362 | 16519 | 14895 | 92776 |
| S/G/Y/R/B/O |
NT_010879 | AC044917 | 80648064 | 1 |   |   | AP001839 | 79720189 | 1 | 64510 | 15294 | 14016 | 93820 |
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