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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_031911 | AC027449 | 18696250 | 1 | chr18 | NT_031911 | AC009681 | 18702514 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_031911 | AC009681 | 18702514 | 1 | chr18 | NT_031911 | AC009889 | 18754133 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_031911 | AC009889 | 18754133 | 1 | chr18 | NT_031911 | AC036178 | 18789660 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_031911 | AC009889 | 18754133 | 1 | chr18 | NT_031911 | AC020748 | 20155360 | 1 | 18115 | 1786 | 24236 | 44137 |
| S/G/Y/R/B/O |
NT_031911 | AC009889 | 18754133 | 1 | chr18 | NT_031911 | AC091038 | 20202947 | 1 | 14136 | 4919 | 17874 | 36929 |
| S/G/Y/R/B/O |
NT_031911 | AC009889 | 18754133 | 1 | chr18 | NT_031911 | AC106037 | 19988517 | 2 | 14044 | 0 | 4903 | 18947 |
| S/G/Y/R/B/O |
NT_031911 | AC036178 | 18789660 | 1 | chr18 | NT_031911 | AC022809 | 18820499 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_031911 | AC036178 | 18789660 | 1 | chr18 | NT_031911 | AC022795 | 19077825 | 1 | 66965 | 3744 | 0 | 70709 |
| S/G/Y/R/B/O |
NT_031911 | AC022809 | 18820499 | 1 | chr18 | NT_031911 | AP001126 | 18883422 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_031911 | AC022809 | 18820499 | 1 | chr18 | NT_031911 | AC015878 | 19700801 | 3 | 16450 | 0 | 0 | 16450 |
| S/G/Y/R/B/O |
NT_031911 | AC022809 | 18820499 | 1 | chr18 | NT_031911 | AC022795 | 19077825 | 1 | 38158 | 2700 | 11538 | 52396 |
| S/G/Y/R/B/O |
NT_031911 | AP001126 | 18883422 | 1 | chr18 | NT_031911 | AC006546 | 18890449 | 3 | 77034 | 527 | 0 | 77561 |
| S/G/Y/R/B/O |
NT_031911 | AP001126 | 18883422 | 1 | chr18 | NT_031911 | AC006545 | 18969049 | 3 | 60879 | 0 | 0 | 60879 |
| S/G/Y/R/B/O |
NT_031911 | AP001126 | 18883422 | 1 | chr18 | NT_031911 | AC110583 | 21022004 | 2 | 24140 | 0 | 0 | 24140 |
| S/G/Y/R/B/O |
NT_031911 | AC006546 | 18890449 | 3 | chr18 | NT_031911 | AC006545 | 18969049 | 3 | 64844 | 0 | 0 | 64844 |
| S/G/Y/R/B/O |
NT_031911 | AC006545 | 18969049 | 3 | chr18 | NT_031911 | AC022795 | 19077825 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_031911 | AC006545 | 18969049 | 3 | chr18 | NT_031911 | AP001126 | 18883422 | 1 | 60879 | 0 | 0 | 60879 |
| S/G/Y/R/B/O |
NT_031911 | AC022795 | 19077825 | 1 | chr18 | NT_031911 | AC011731 | 19270514 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_031911 | AC022795 | 19077825 | 1 | chr18 | NT_031911 | AC022809 | 18820499 | 1 | 38158 | 2700 | 11538 | 52396 |
| S/G/Y/R/B/O |
NT_031911 | AC022795 | 19077825 | 1 | chr18 | NT_031911 | AC036178 | 18789660 | 1 | 66965 | 3744 | 0 | 70709 |
| S/G/Y/R/B/O |
NT_031911 | AC011731 | 19270514 | 3 | chr18 | NT_031911 | AC105247 | 19420721 | 2 | 6972 | 0 | 0 | 6972 |
| S/G/Y/R/B/O |
NT_031911 | AC105247 | 19420721 | 2 | chr18 | NT_031911 | AC106033 | 19562051 | 2 | 25776 | 0 | 0 | 25776 |
| S/G/Y/R/B/O |
NT_031911 | AC106033 | 19562051 | 2 | chr18 | NT_031911 | AC091147 | 19606026 | 2 | 53781 | 0 | 9976 | 63757 |
| S/G/Y/R/B/O |
NT_031911 | AC106033 | 19562051 | 2 | chr18 | NT_031911 | AC021145 | 19652329 | 1 | 65778 | 0 | 5976 | 71754 |
| S/G/Y/R/B/O |
NT_031911 | AC091147 | 19606026 | 2 | chr18 | NT_031911 | AC021145 | 19652329 | 1 | 152310 | 0 | 9342 | 161652 |
| S/G/Y/R/B/O |
NT_031911 | AC091147 | 19606026 | 2 | chr18 | NT_031911 | AC090912 | 20776090 | 2 | 21406 | 0 | 0 | 21406 |
| S/G/Y/R/B/O |
NT_031911 | AC091147 | 19606026 | 2 | chr18 | NT_031911 | AP002750 | 20766274 | 1 | 41424 | 3957 | 0 | 45381 |
| S/G/Y/R/B/O |
NT_031911 | AC091147 | 19606026 | 2 |   |   | AC017066 | 19420721 | 1 | 18397 | 2521 | 0 | 20918 |
| S/G/Y/R/B/O |
NT_031911 | AC021145 | 19652329 | 1 | chr18 | NT_031911 | AC015878 | 19700801 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_031911 | AC021145 | 19652329 | 1 | chr18 | NT_031911 | AC106033 | 19562051 | 2 | 65778 | 0 | 5976 | 71754 |
| S/G/Y/R/B/O |
NT_031911 | AC021145 | 19652329 | 1 | chr18 | NT_031911 | AP002750 | 20766274 | 1 | 21027 | 0 | 0 | 21027 |
| S/G/Y/R/B/O |
NT_031911 | AC015878 | 19700801 | 3 | chr18 | NT_031911 | AC011774 | 19846721 | 1 | 49805 | 0 | 0 | 49805 |
| S/G/Y/R/B/O |
NT_031911 | AC015878 | 19700801 | 3 | chr18 | NT_031911 | AC022809 | 18820499 | 1 | 16450 | 0 | 0 | 16450 |
| S/G/Y/R/B/O |
NT_031911 | AC015878 | 19700801 | 3 | chr18 | NT_031911 | AC027523 | 19921681 | 1 | 10549 | 0 | 0 | 10549 |
| S/G/Y/R/B/O |
NT_031911 | AC011774 | 19846721 | 1 | chr18 | NT_031911 | AP001848 | 19898500 | 1 | 43414 | 0 | 9625 | 53039 |
| S/G/Y/R/B/O |
NT_031911 | AC011774 | 19846721 | 1 | chr18 | NT_031911 | AC027523 | 19921681 | 1 | 95506 | 0 | 0 | 95506 |
| S/G/Y/R/B/O |
NT_031911 | AC011774 | 19846721 | 1 | chr18 | NT_031911 | AC106037 | 19988517 | 2 | 11461 | 0 | 0 | 11461 |
| S/G/Y/R/B/O |
NT_031911 | AP001848 | 19898500 | 1 | chr18 | NT_031911 | AC027523 | 19921681 | 1 | 80259 | 0 | 45263 | 125522 |
| S/G/Y/R/B/O |
NT_031911 | AP001848 | 19898500 | 1 | chr18 | NT_031911 | AC020748 | 20155360 | 1 | 11093 | 1988 | 18250 | 31331 |
| S/G/Y/R/B/O |
NT_031911 | AP001848 | 19898500 | 1 | chr18 | NT_031911 | AC091038 | 20202947 | 1 | 22160 | 1986 | 10138 | 34284 |
| S/G/Y/R/B/O |
NT_031911 | AP001848 | 19898500 | 1 | chr18 | NT_031911 | AC106037 | 19988517 | 2 | 30116 | 2925 | 43306 | 76347 |
| S/G/Y/R/B/O |
NT_031911 | AP001848 | 19898500 | 1 | chr18 | NT_031911 | AP001012 | 19997492 | 1 | 42397 | 3531 | 6935 | 52863 |
| S/G/Y/R/B/O |
NT_031911 | AC027523 | 19921681 | 1 | chr18 | NT_031911 | AC106037 | 19988517 | 2 | 70088 | 0 | 0 | 70088 |
| S/G/Y/R/B/O |
NT_031911 | AC027523 | 19921681 | 1 | chr18 | NT_031911 | AC011774 | 19846721 | 1 | 95506 | 0 | 0 | 95506 |
| S/G/Y/R/B/O |
NT_031911 | AC027523 | 19921681 | 1 | chr18 | NT_031911 | AC015878 | 19700801 | 3 | 10549 | 0 | 0 | 10549 |
| S/G/Y/R/B/O |
NT_031911 | AC027523 | 19921681 | 1 | chr18 | NT_031911 | AP001012 | 19997492 | 1 | 32119 | 4554 | 1019 | 37692 |
| S/G/Y/R/B/O |
NT_031911 | AC106037 | 19988517 | 2 | chr18 | NT_031911 | AP001012 | 19997492 | 1 | 63048 | 10783 | 21541 | 95372 |
| S/G/Y/R/B/O |
NT_031911 | AC106037 | 19988517 | 2 | chr18 | NT_031911 | AC009889 | 18754133 | 1 | 14044 | 0 | 4903 | 18947 |
| S/G/Y/R/B/O |
NT_031911 | AC106037 | 19988517 | 2 | chr18 | NT_031911 | AC011774 | 19846721 | 1 | 11461 | 0 | 0 | 11461 |
| S/G/Y/R/B/O |
NT_031911 | AC106037 | 19988517 | 2 | chr18 | NT_031911 | AC020748 | 20155360 | 1 | 16428 | 2237 | 27988 | 46653 |
| S/G/Y/R/B/O |
NT_031911 | AC106037 | 19988517 | 2 | chr18 | NT_031911 | AC091038 | 20202947 | 1 | 82263 | 2735 | 0 | 84998 |
| S/G/Y/R/B/O |
NT_031911 | AC106037 | 19988517 | 2 | chr18 | NT_031911 | AP001848 | 19898500 | 1 | 30116 | 2925 | 43306 | 76347 |
| S/G/Y/R/B/O |
NT_031911 | AP001012 | 19997492 | 1 | chr18 | NT_031911 | AC020748 | 20155360 | 1 | 23316 | 6098 | 48218 | 77632 |
| S/G/Y/R/B/O |
NT_031911 | AP001012 | 19997492 | 1 | chr18 | NT_031911 | AC027523 | 19921681 | 1 | 32119 | 4554 | 1019 | 37692 |
| S/G/Y/R/B/O |
NT_031911 | AP001012 | 19997492 | 1 | chr18 | NT_031911 | AC091038 | 20202947 | 1 | 36209 | 8034 | 26734 | 70977 |
| S/G/Y/R/B/O |
NT_031911 | AP001012 | 19997492 | 1 | chr18 | NT_031911 | AP001848 | 19898500 | 1 | 42397 | 3531 | 6935 | 52863 |
| S/G/Y/R/B/O |
NT_031911 | AC020748 | 20155360 | 1 | chr18 | NT_031911 | AC091038 | 20202947 | 1 | 110519 | 0 | 61010 | 171529 |
| S/G/Y/R/B/O |
NT_031911 | AC020748 | 20155360 | 1 | chr18 | NT_031911 | AC009889 | 18754133 | 1 | 18115 | 1786 | 24236 | 44137 |
| S/G/Y/R/B/O |
NT_031911 | AC020748 | 20155360 | 1 | chr18 | NT_031911 | AC103987 | 20271414 | 2 | 43224 | 0 | 1098 | 44322 |
| S/G/Y/R/B/O |
NT_031911 | AC020748 | 20155360 | 1 | chr18 | NT_031911 | AC106037 | 19988517 | 2 | 16428 | 2237 | 27988 | 46653 |
| S/G/Y/R/B/O |
NT_031911 | AC020748 | 20155360 | 1 | chr18 | NT_031911 | AP001352 | 20295466 | 1 | 47535 | 1666 | 18099 | 67300 |
| S/G/Y/R/B/O |
NT_031911 | AC020748 | 20155360 | 1 | chr18 | NT_031911 | AP001848 | 19898500 | 1 | 11093 | 1988 | 18250 | 31331 |
| S/G/Y/R/B/O |
NT_031911 | AC091038 | 20202947 | 1 | chr18 | NT_031911 | AC103987 | 20271414 | 2 | 42972 | 0 | 1098 | 44070 |
| S/G/Y/R/B/O |
NT_031911 | AC091038 | 20202947 | 1 | chr18 | NT_031911 | AC009889 | 18754133 | 1 | 14136 | 4919 | 17874 | 36929 |
| S/G/Y/R/B/O |
NT_031911 | AC091038 | 20202947 | 1 | chr18 | NT_031911 | AC106037 | 19988517 | 2 | 82263 | 2735 | 0 | 84998 |
| S/G/Y/R/B/O |
NT_031911 | AC091038 | 20202947 | 1 | chr18 | NT_031911 | AP001012 | 19997492 | 1 | 36209 | 8034 | 26734 | 70977 |
| S/G/Y/R/B/O |
NT_031911 | AC091038 | 20202947 | 1 | chr18 | NT_031911 | AP001352 | 20295466 | 1 | 47852 | 0 | 16664 | 64516 |
| S/G/Y/R/B/O |
NT_031911 | AC091038 | 20202947 | 1 | chr18 | NT_031911 | AP001848 | 19898500 | 1 | 22160 | 1986 | 10138 | 34284 |
| S/G/Y/R/B/O |
NT_031911 | AC103987 | 20271414 | 2 | chr18 | NT_031911 | AP001352 | 20295466 | 1 | 130786 | 0 | 5129 | 135915 |
| S/G/Y/R/B/O |
NT_031911 | AC103987 | 20271414 | 2 | chr18 | NT_031911 | AC020748 | 20155360 | 1 | 43224 | 0 | 1098 | 44322 |
| S/G/Y/R/B/O |
NT_031911 | AC103987 | 20271414 | 2 | chr18 | NT_031911 | AC106854 | 20391807 | 3 | 57267 | 0 | 0 | 57267 |
| S/G/Y/R/B/O |
NT_031911 | AP001352 | 20295466 | 1 | chr18 | NT_031911 | AC106854 | 20391807 | 3 | 31242 | 0 | 1110 | 32352 |
| S/G/Y/R/B/O |
NT_031911 | AP001352 | 20295466 | 1 | chr18 | NT_031911 | AC020748 | 20155360 | 1 | 47535 | 1666 | 18099 | 67300 |
| S/G/Y/R/B/O |
NT_031911 | AP001352 | 20295466 | 1 | chr18 | NT_031911 | AC091038 | 20202947 | 1 | 47852 | 0 | 16664 | 64516 |
| S/G/Y/R/B/O |
NT_031911 | AC106854 | 20391807 | 3 | chr18 | NT_031911 | AC091043 | 20451338 | 1 | 50028 | 0 | 8802 | 58830 |
| S/G/Y/R/B/O |
NT_031911 | AC106854 | 20391807 | 3 | chr18 | NT_031911 | AC022487 | 20524482 | 1 | 31437 | 0 | 2096 | 33533 |
| S/G/Y/R/B/O |
NT_031911 | AC106854 | 20391807 | 3 | chr18 | NT_031911 | AC103987 | 20271414 | 2 | 57267 | 0 | 0 | 57267 |
| S/G/Y/R/B/O |
NT_031911 | AC091043 | 20451338 | 1 | chr18 | NT_031911 | AC022487 | 20524482 | 1 | 145673 | 0 | 21406 | 167079 |
| S/G/Y/R/B/O |
NT_031911 | AC091043 | 20451338 | 1 | chr18 | NT_031911 | AC009669 | 20587130 | 1 | 50778 | 2062 | 1039 | 53879 |
| S/G/Y/R/B/O |
NT_031911 | AC091043 | 20451338 | 1 | chr18 | NT_031911 | AC091588 | 20587231 | 1 | 53641 | 0 | 0 | 53641 |
| S/G/Y/R/B/O |
NT_031911 | AC091043 | 20451338 | 1 | chr18 | NT_031911 | AP001084 | 20688801 | 1 | 44637 | 0 | 3760 | 48397 |
| S/G/Y/R/B/O |
NT_031911 | AC022487 | 20524482 | 1 | chr18 | NT_031911 | AC009669 | 20587130 | 1 | 29131 | 4121 | 3599 | 36851 |
| S/G/Y/R/B/O |
NT_031911 | AC022487 | 20524482 | 1 | chr18 | NT_031911 | AC091588 | 20587231 | 1 | 53506 | 1695 | 0 | 55201 |
| S/G/Y/R/B/O |
NT_031911 | AC022487 | 20524482 | 1 | chr18 | NT_031911 | AC106854 | 20391807 | 3 | 31437 | 0 | 2096 | 33533 |
| S/G/Y/R/B/O |
NT_031911 | AC022487 | 20524482 | 1 | chr18 | NT_031911 | AP001084 | 20688801 | 1 | 34823 | 0 | 1003 | 35826 |
| S/G/Y/R/B/O |
NT_031911 | AC009669 | 20587130 | 1 | chr18 | NT_031911 | AC091588 | 20587231 | 1 | 118276 | 9347 | 3679 | 131302 |
| S/G/Y/R/B/O |
NT_031911 | AC009669 | 20587130 | 1 | chr18 | NT_031911 | AC091043 | 20451338 | 1 | 50778 | 2062 | 1039 | 53879 |
| S/G/Y/R/B/O |
NT_031911 | AC009669 | 20587130 | 1 | chr18 | NT_031911 | AP001084 | 20688801 | 1 | 58971 | 12786 | 9260 | 81017 |
| S/G/Y/R/B/O |
NT_031911 | AC091588 | 20587231 | 1 | chr18 | NT_031911 | AP001084 | 20688801 | 1 | 122573 | 7769 | 11459 | 141801 |
| S/G/Y/R/B/O |
NT_031911 | AC091588 | 20587231 | 1 | chr18 | NT_031911 | AC022487 | 20524482 | 1 | 53506 | 1695 | 0 | 55201 |
| S/G/Y/R/B/O |
NT_031911 | AC091588 | 20587231 | 1 | chr18 | NT_031911 | AC091043 | 20451338 | 1 | 53641 | 0 | 0 | 53641 |
| S/G/Y/R/B/O |
NT_031911 | AP001084 | 20688801 | 1 | chr18 | NT_031911 | AP002750 | 20766274 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_031911 | AP001084 | 20688801 | 1 | chr18 | NT_031911 | AC009669 | 20587130 | 1 | 58971 | 12786 | 9260 | 81017 |
| S/G/Y/R/B/O |
NT_031911 | AP001084 | 20688801 | 1 | chr18 | NT_031911 | AC022487 | 20524482 | 1 | 34823 | 0 | 1003 | 35826 |
| S/G/Y/R/B/O |
NT_031911 | AP001084 | 20688801 | 1 | chr18 | NT_031911 | AC091043 | 20451338 | 1 | 44637 | 0 | 3760 | 48397 |
| S/G/Y/R/B/O |
NT_031911 | AP002750 | 20766274 | 1 | chr18 | NT_031911 | AC090912 | 20776090 | 2 | 110041 | 8886 | 10057 | 128984 |
| S/G/Y/R/B/O |
NT_031911 | AP002750 | 20766274 | 1 | chr18 | NT_031911 | AC021145 | 19652329 | 1 | 21027 | 0 | 0 | 21027 |
| S/G/Y/R/B/O |
NT_031911 | AP002750 | 20766274 | 1 | chr18 | NT_031911 | AC090914 | 20892964 | 1 | 63492 | 4556 | 0 | 68048 |
| S/G/Y/R/B/O |
NT_031911 | AP002750 | 20766274 | 1 | chr18 | NT_031911 | AC091147 | 19606026 | 2 | 41424 | 3957 | 0 | 45381 |
| S/G/Y/R/B/O |
NT_031911 | AP002750 | 20766274 | 1 |   |   | AC017066 | 20587231 | 1 | 71077 | 7372 | 10056 | 88505 |
| S/G/Y/R/B/O |
NT_031911 | AP002750 | 20766274 | 1 |   |   | AC069156 | 19652329 | 1 | 42475 | 2887 | 2868 | 48230 |
| S/G/Y/R/B/O |
NT_031911 | AC090912 | 20776090 | 2 | chr18 | NT_031911 | AC090914 | 20892964 | 1 | 69914 | 0 | 0 | 69914 |
| S/G/Y/R/B/O |
NT_031911 | AC090912 | 20776090 | 2 | chr18 | NT_031911 | AC091147 | 19606026 | 2 | 21406 | 0 | 0 | 21406 |
| S/G/Y/R/B/O |
NT_031911 | AC090912 | 20776090 | 2 |   |   | AC017066 | 19606026 | 1 | 129550 | 6641 | 29629 | 165820 |
| S/G/Y/R/B/O |
NT_031911 | AC090912 | 20776090 | 2 |   |   | AC069156 | 78068361 | 1 | 34686 | 2717 | 7400 | 44803 |
| S/G/Y/R/B/O |
NT_031911 | AC090914 | 20892964 | 1 | chr18 | NT_031911 | AC110583 | 21022004 | 2 | 12469 | 0 | 55513 | 67982 |
| S/G/Y/R/B/O |
NT_031911 | AC090914 | 20892964 | 1 | chr18 | NT_031911 | AP002750 | 20766274 | 1 | 63492 | 4556 | 0 | 68048 |
| S/G/Y/R/B/O |
NT_031911 | AC090914 | 20892964 | 1 |   |   | AC017066 | 20766274 | 1 | 17005 | 0 | 34503 | 51508 |
| S/G/Y/R/B/O |
NT_031911 | AC090914 | 20892964 | 1 |   |   | AC069156 | 20766274 | 1 | 69075 | 0 | 49801 | 118876 |
| S/G/Y/R/B/O |
NT_031911 | AC110583 | 21022004 | 2 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_031911 | AC110583 | 21022004 | 2 | chr18 | NT_031911 | AP001126 | 18883422 | 1 | 24140 | 0 | 0 | 24140 |
| S/G/Y/R/B/O |
NT_031911 | AC110583 | 21022004 | 2 |   |   | AC069156 | 92711761 | 1 | 18852 | 0 | 41026 | 59878 |
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