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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_030853 | AP001094 | 8271940 | 1 | chr18 | NT_030853 | AC021310 | 8283034 | 1 | 148253 | 4629 | 13778 | 166660 |
| S/G/Y/R/B/O |
NT_030853 | AP001094 | 8271940 | 1 | chr18 | NT_030853 | AP000899 | 8429057 | 1 | 15206 | 1843 | 0 | 17049 |
| S/G/Y/R/B/O |
NT_030853 | AP001094 | 8271940 | 1 | chr18 | NT_030853 | AP001078 | 8424259 | 1 | 37115 | 1660 | 3701 | 42476 |
| S/G/Y/R/B/O |
NT_030853 | AP001094 | 8271940 | 1 | chr18 | NT_030853 | AP001793 | 8469932 | 1 | 11737 | 0 | 0 | 11737 |
| S/G/Y/R/B/O |
NT_030853 | AC021310 | 8283034 | 1 | chr18 | NT_030853 | AP001078 | 8424259 | 1 | 57739 | 3602 | 0 | 61341 |
| S/G/Y/R/B/O |
NT_030853 | AC021310 | 8283034 | 1 | chr18 | NT_030853 | AP000899 | 8429057 | 1 | 38166 | 1549 | 0 | 39715 |
| S/G/Y/R/B/O |
NT_030853 | AC021310 | 8283034 | 1 | chr18 | NT_030853 | AP001793 | 8469932 | 1 | 16236 | 0 | 1013 | 17249 |
| S/G/Y/R/B/O |
NT_030853 | AP001078 | 8424259 | 1 | chr18 | NT_030853 | AP000899 | 8429057 | 1 | 83980 | 6076 | 2249 | 92305 |
| S/G/Y/R/B/O |
NT_030853 | AP001078 | 8424259 | 1 | chr18 | NT_030853 | AC015676 | 8471094 | 1 | 60661 | 6076 | 2310 | 69047 |
| S/G/Y/R/B/O |
NT_030853 | AP001078 | 8424259 | 1 | chr18 | NT_030853 | AP001094 | 8271940 | 1 | 37115 | 1660 | 3701 | 42476 |
| S/G/Y/R/B/O |
NT_030853 | AP001078 | 8424259 | 1 | chr18 | NT_030853 | AP001793 | 8469932 | 1 | 59783 | 15385 | 7202 | 82370 |
| S/G/Y/R/B/O |
NT_030853 | AP000899 | 8429057 | 1 | chr18 | NT_030853 | AP001793 | 8469932 | 1 | 108256 | 4315 | 1657 | 114228 |
| S/G/Y/R/B/O |
NT_030853 | AP000899 | 8429057 | 1 | chr18 | NT_030853 | AC015676 | 8471094 | 1 | 107758 | 0 | 32388 | 140146 |
| S/G/Y/R/B/O |
NT_030853 | AP000899 | 8429057 | 1 | chr18 | NT_030853 | AC021310 | 8283034 | 1 | 38166 | 1549 | 0 | 39715 |
| S/G/Y/R/B/O |
NT_030853 | AP000899 | 8429057 | 1 | chr18 | NT_030853 | AP001094 | 8271940 | 1 | 15206 | 1843 | 0 | 17049 |
| S/G/Y/R/B/O |
NT_030853 | AP001793 | 8469932 | 1 | chr18 | NT_030853 | AC015676 | 8471094 | 1 | 93638 | 4287 | 27893 | 125818 |
| S/G/Y/R/B/O |
NT_030853 | AP001793 | 8469932 | 1 | chr18 | NT_030853 | AC008052 | 8621669 | 1 | 15658 | 0 | 0 | 15658 |
| S/G/Y/R/B/O |
NT_030853 | AP001793 | 8469932 | 1 | chr18 | NT_030853 | AC021310 | 8283034 | 1 | 16236 | 0 | 1013 | 17249 |
| S/G/Y/R/B/O |
NT_030853 | AP001793 | 8469932 | 1 | chr18 | NT_030853 | AP000864 | 8664609 | 1 | 15615 | 0 | 0 | 15615 |
| S/G/Y/R/B/O |
NT_030853 | AP001793 | 8469932 | 1 | chr18 | NT_030853 | AP001078 | 8424259 | 1 | 59783 | 15385 | 7202 | 82370 |
| S/G/Y/R/B/O |
NT_030853 | AP001793 | 8469932 | 1 | chr18 | NT_030853 | AP001094 | 8271940 | 1 | 11737 | 0 | 0 | 11737 |
| S/G/Y/R/B/O |
NT_030853 | AC015676 | 8471094 | 1 | chr18 | NT_030853 | AC008052 | 8621669 | 1 | 35662 | 0 | 10399 | 46061 |
| S/G/Y/R/B/O |
NT_030853 | AC015676 | 8471094 | 1 | chr18 | NT_030853 | AC084832 | 8622213 | 1 | 23828 | 1981 | 0 | 25809 |
| S/G/Y/R/B/O |
NT_030853 | AC015676 | 8471094 | 1 | chr18 | NT_030853 | AP000864 | 8664609 | 1 | 30201 | 0 | 0 | 30201 |
| S/G/Y/R/B/O |
NT_030853 | AC015676 | 8471094 | 1 | chr18 | NT_030853 | AP000899 | 8429057 | 1 | 107758 | 0 | 32388 | 140146 |
| S/G/Y/R/B/O |
NT_030853 | AC015676 | 8471094 | 1 | chr18 | NT_030853 | AP001078 | 8424259 | 1 | 60661 | 6076 | 2310 | 69047 |
| S/G/Y/R/B/O |
NT_030853 | AC008052 | 8621669 | 1 | chr18 | NT_030853 | AC084832 | 8622213 | 1 | 118166 | 2337 | 4468 | 124971 |
| S/G/Y/R/B/O |
NT_030853 | AC008052 | 8621669 | 1 | chr18 | NT_030853 | AC027579 | 8785640 | 1 | 27097 | 0 | 1242 | 28339 |
| S/G/Y/R/B/O |
NT_030853 | AC008052 | 8621669 | 1 | chr18 | NT_030853 | AP000864 | 8664609 | 1 | 81033 | 2252 | 3670 | 86955 |
| S/G/Y/R/B/O |
NT_030853 | AC008052 | 8621669 | 1 | chr18 | NT_030853 | AP001793 | 8469932 | 1 | 15658 | 0 | 0 | 15658 |
| S/G/Y/R/B/O |
NT_030853 | AC084832 | 8622213 | 1 | chr18 | NT_030853 | AP000864 | 8664609 | 1 | 114761 | 3820 | 9502 | 128083 |
| S/G/Y/R/B/O |
NT_030853 | AC084832 | 8622213 | 1 | chr18 | NT_030853 | AC015676 | 8471094 | 1 | 23828 | 1981 | 0 | 25809 |
| S/G/Y/R/B/O |
NT_030853 | AC084832 | 8622213 | 1 | chr18 | NT_030853 | AC027579 | 8785640 | 1 | 29632 | 0 | 514 | 30146 |
| S/G/Y/R/B/O |
NT_030853 | AP000864 | 8664609 | 1 | chr18 | NT_030853 | AC027579 | 8785640 | 1 | 28902 | 0 | 0 | 28902 |
| S/G/Y/R/B/O |
NT_030853 | AP000864 | 8664609 | 1 | chr18 | NT_030853 | AC008052 | 8621669 | 1 | 81033 | 2252 | 3670 | 86955 |
| S/G/Y/R/B/O |
NT_030853 | AP000864 | 8664609 | 1 | chr18 | NT_030853 | AC015676 | 8471094 | 1 | 30201 | 0 | 0 | 30201 |
| S/G/Y/R/B/O |
NT_030853 | AP000864 | 8664609 | 1 | chr18 | NT_030853 | AP001793 | 8469932 | 1 | 15615 | 0 | 0 | 15615 |
| S/G/Y/R/B/O |
NT_030853 | AC027579 | 8785640 | 1 | chr18 | NT_030853 | AP000921 | 8806845 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030853 | AC027579 | 8785640 | 1 | chr18 | NT_030853 | AC008052 | 8621669 | 1 | 27097 | 0 | 1242 | 28339 |
| S/G/Y/R/B/O |
NT_030853 | AC027579 | 8785640 | 1 | chr18 | NT_030853 | AC022727 | 8828101 | 1 | 84204 | 0 | 5883 | 90087 |
| S/G/Y/R/B/O |
NT_030853 | AC027579 | 8785640 | 1 | chr18 | NT_030853 | AC084832 | 8622213 | 1 | 29632 | 0 | 514 | 30146 |
| S/G/Y/R/B/O |
NT_030853 | AC027579 | 8785640 | 1 | chr18 | NT_030853 | AP001531 | 8811181 | 1 | 16564 | 3292 | 19449 | 39305 |
| S/G/Y/R/B/O |
NT_030853 | AP000921 | 8806845 | 1 | chr18 | NT_030853 | AP001531 | 8811181 | 1 | 31172 | 0 | 5405 | 36577 |
| S/G/Y/R/B/O |
NT_030853 | AP000921 | 8806845 | 1 | chr18 | NT_030853 | AC022727 | 8828101 | 1 | 46286 | 0 | 10915 | 57201 |
| S/G/Y/R/B/O |
NT_030853 | AP000921 | 8806845 | 1 | chr18 | NT_030853 | AC036162 | 8896828 | 1 | 84692 | 12052 | 3884 | 100628 |
| S/G/Y/R/B/O |
NT_030853 | AP000921 | 8806845 | 1 | chr18 | NT_030853 | AP001089 | 8884853 | 1 | 14976 | 4600 | 5288 | 24864 |
| S/G/Y/R/B/O |
NT_030853 | AP001531 | 8811181 | 1 | chr18 | NT_030853 | AC022727 | 8828101 | 1 | 79670 | 1681 | 23982 | 105333 |
| S/G/Y/R/B/O |
NT_030853 | AP001531 | 8811181 | 1 | chr18 | NT_030853 | AC027579 | 8785640 | 1 | 16564 | 3292 | 19449 | 39305 |
| S/G/Y/R/B/O |
NT_030853 | AC022727 | 8828101 | 1 | chr18 | NT_030853 | AP001089 | 8884853 | 1 | 6501 | 0 | 0 | 6501 |
| S/G/Y/R/B/O |
NT_030853 | AC022727 | 8828101 | 1 | chr18 | NT_030853 | AC027579 | 8785640 | 1 | 84204 | 0 | 5883 | 90087 |
| S/G/Y/R/B/O |
NT_030853 | AC022727 | 8828101 | 1 | chr18 | NT_030853 | AC036162 | 8896828 | 1 | 17610 | 0 | 0 | 17610 |
| S/G/Y/R/B/O |
NT_030853 | AC022727 | 8828101 | 1 | chr18 | NT_030853 | AP000921 | 8806845 | 1 | 46286 | 0 | 10915 | 57201 |
| S/G/Y/R/B/O |
NT_030853 | AP001089 | 8884853 | 1 | chr18 | NT_030853 | AC036162 | 8896828 | 1 | 25215 | 8042 | 5412 | 38669 |
| S/G/Y/R/B/O |
NT_030853 | AP001089 | 8884853 | 1 | chr18 | NT_030853 | AP000921 | 8806845 | 1 | 14976 | 4600 | 5288 | 24864 |
| S/G/Y/R/B/O |
NT_030853 | AC036162 | 8896828 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_030853 | AC036162 | 8896828 | 1 | chr18 | NT_030853 | AC022727 | 8828101 | 1 | 17610 | 0 | 0 | 17610 |
| S/G/Y/R/B/O |
NT_030853 | AC036162 | 8896828 | 1 | chr18 | NT_030853 | AP000921 | 8806845 | 1 | 84692 | 12052 | 3884 | 100628 |
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