|
| |
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
| |
| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_030852 | AC018972 | 32090510 | 3 | chr18 | NT_030852 | AC087397 | 32190434 | 2 | 60678 | 0 | 0 | 60678 |
| S/G/Y/R/B/O |
NT_030852 | AC018972 | 32090510 | 3 | chr18 | NT_010924 | AC025291 | 32036429 | 1 | 50471 | 0 | 0 | 50471 |
| S/G/Y/R/B/O |
NT_030852 | AC018972 | 32090510 | 3 | chr18 | NT_010924 | AC087814 | 31995973 | 1 | 63399 | 0 | 0 | 63399 |
| S/G/Y/R/B/O |
NT_030852 | AC018972 | 32090510 | 3 |   |   | AP001131 | 77167542 | 1 | 104446 | 0 | 0 | 104446 |
| S/G/Y/R/B/O |
NT_030852 | AC018972 | 32090510 | 3 |   |   | AP002422 | 77167542 | 1 | 31529 | 2044 | 4882 | 38455 |
| S/G/Y/R/B/O |
NT_030852 | AC018972 | 32090510 | 3 |   |   | AP002753 | 77167542 | 1 | 54769 | 2219 | 5329 | 62317 |
| S/G/Y/R/B/O |
NT_030852 | AC087397 | 32190434 | 2 | chr18 | NT_030852 | AC104985 | 32344065 | 3 | 32299 | 0 | 0 | 32299 |
| S/G/Y/R/B/O |
NT_030852 | AC087397 | 32190434 | 2 |   |   | AP001131 | 32344065 | 1 | 84412 | 0 | 0 | 84412 |
| S/G/Y/R/B/O |
NT_030852 | AC104985 | 32344065 | 3 | chr18 | NT_030852 | AC104988 | 32516252 | 3 | 41949 | 0 | 0 | 41949 |
| S/G/Y/R/B/O |
NT_030852 | AC104988 | 32516252 | 3 | chr18 | NT_030852 | AC103774 | 32645791 | 3 | 21044 | 0 | 0 | 21044 |
| S/G/Y/R/B/O |
NT_030852 | AC104988 | 32516252 | 3 |   |   | AP001125 | 32344065 | 1 | 28070 | 0 | 0 | 28070 |
| S/G/Y/R/B/O |
NT_030852 | AC103774 | 32645791 | 3 | chr18 | NT_030852 | AC013290 | 32796196 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030852 | AC103774 | 32645791 | 3 |   |   | AC015672 | 32344065 | 1 | 39885 | 0 | 0 | 39885 |
| S/G/Y/R/B/O |
NT_030852 | AC103774 | 32645791 | 3 |   |   | AC069131 | 32344065 | 1 | 71460 | 4006 | 14612 | 90078 |
| S/G/Y/R/B/O |
NT_030852 | AC103774 | 32645791 | 3 |   |   | AC090410 | 32344065 | 1 | 122071 | 0 | 0 | 122071 |
| S/G/Y/R/B/O |
NT_030852 | AC103774 | 32645791 | 3 |   |   | AP001125 | 32516252 | 1 | 121896 | 0 | 0 | 121896 |
| S/G/Y/R/B/O |
NT_030852 | AC103774 | 32645791 | 3 |   |   | AP001571 | 32516252 | 1 | 78059 | 2464 | 12383 | 92906 |
| S/G/Y/R/B/O |
NT_030852 | AC013290 | 32796196 | 2 | chr18 | NT_030852 | AC022601 | 32935831 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030852 | AC013290 | 32796196 | 2 |   |   | AC015672 | 32516252 | 1 | 107775 | 0 | 0 | 107775 |
| S/G/Y/R/B/O |
NT_030852 | AC013290 | 32796196 | 2 |   |   | AC069131 | 32516252 | 1 | 43437 | 6200 | 7761 | 57398 |
| S/G/Y/R/B/O |
NT_030852 | AC013290 | 32796196 | 2 |   |   | AC087743 | 32516252 | 1 | 135424 | 0 | 0 | 135424 |
| S/G/Y/R/B/O |
NT_030852 | AC013290 | 32796196 | 2 |   |   | AC090410 | 32516252 | 1 | 76183 | 0 | 0 | 76183 |
| S/G/Y/R/B/O |
NT_030852 | AC013290 | 32796196 | 2 |   |   | AP001571 | 32516252 | 1 | 41552 | 0 | 40922 | 82474 |
| S/G/Y/R/B/O |
NT_030852 | AC013290 | 32796196 | 2 |   |   | AP002895 | 32516252 | 1 | 59039 | 7834 | 19881 | 86754 |
| S/G/Y/R/B/O |
NT_030852 | AC022601 | 32935831 | 2 | chr18 | NT_030852 | AC068506 | 33063137 | 2 | 38708 | 0 | 0 | 38708 |
| S/G/Y/R/B/O |
NT_030852 | AC022601 | 32935831 | 2 |   |   | AC087743 | 33063137 | 1 | 47248 | 0 | 0 | 47248 |
| S/G/Y/R/B/O |
NT_030852 | AC022601 | 32935831 | 2 |   |   | AP002411 | 33063137 | 1 | 48414 | 28282 | 9510 | 86206 |
| S/G/Y/R/B/O |
NT_030852 | AC022601 | 32935831 | 2 |   |   | AP002895 | 33063137 | 1 | 32679 | 0 | 15118 | 47797 |
| S/G/Y/R/B/O |
NT_030852 | AC068506 | 33063137 | 2 | chr18 | NT_030852 | AC009277 | 33125597 | 3 | 74276 | 0 | 0 | 74276 |
| S/G/Y/R/B/O |
NT_030852 | AC068506 | 33063137 | 2 |   |   | AP001270 | 32935831 | 1 | 93252 | 0 | 3572 | 96824 |
| S/G/Y/R/B/O |
NT_030852 | AC068506 | 33063137 | 2 |   |   | AP002411 | 32935831 | 1 | 73590 | 28167 | 10209 | 111966 |
| S/G/Y/R/B/O |
NT_030852 | AC009277 | 33125597 | 3 | chr18 | NT_030852 | AC015967 | 33285998 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030852 | AC009277 | 33125597 | 3 |   |   | AC090407 | 33063137 | 1 | 25102 | 0 | 0 | 25102 |
| S/G/Y/R/B/O |
NT_030852 | AC009277 | 33125597 | 3 |   |   | AP001270 | 33555833 | 1 | 116992 | 0 | 1233 | 118225 |
| S/G/Y/R/B/O |
NT_030852 | AC015967 | 33285998 | 3 | chr18 | NT_030852 | AC068513 | 33457891 | 3 | 138142 | 0 | 0 | 138142 |
| S/G/Y/R/B/O |
NT_030852 | AC015967 | 33285998 | 3 | chr18 | NT_030852 | AC011815 | 33473490 | 3 | 58315 | 0 | 0 | 58315 |
| S/G/Y/R/B/O |
NT_030852 | AC015967 | 33285998 | 3 | chr18 | NT_030852 | AP001165 | 33555833 | 1 | 117334 | 14460 | 14255 | 146049 |
| S/G/Y/R/B/O |
NT_030852 | AC015967 | 33285998 | 3 |   |   | AC090407 | 33457891 | 1 | 164644 | 0 | 0 | 164644 |
| S/G/Y/R/B/O |
NT_030852 | AC015967 | 33285998 | 3 |   |   | AP001364 | 33555833 | 1 | 176129 | 0 | 9010 | 185139 |
| S/G/Y/R/B/O |
NT_030852 | AC068513 | 33457891 | 3 | chr18 | NT_030852 | AC011815 | 33473490 | 3 | 73999 | 0 | 0 | 73999 |
| S/G/Y/R/B/O |
NT_030852 | AC068513 | 33457891 | 3 | chr18 | NT_030852 | AP001165 | 33555833 | 1 | 70432 | 12092 | 3371 | 85895 |
| S/G/Y/R/B/O |
NT_030852 | AC068513 | 33457891 | 3 |   |   | AC090407 | 33285998 | 1 | 26779 | 0 | 0 | 26779 |
| S/G/Y/R/B/O |
NT_030852 | AC068513 | 33457891 | 3 |   |   | AP001364 | 33555833 | 1 | 124630 | 0 | 9021 | 133651 |
| S/G/Y/R/B/O |
NT_030852 | AC011815 | 33473490 | 3 | chr18 | NT_030852 | AP001165 | 33555833 | 1 | 18133 | 2645 | 1221 | 21999 |
| S/G/Y/R/B/O |
NT_030852 | AC011815 | 33473490 | 3 | chr18 | NT_030852 | AC015967 | 33285998 | 3 | 58315 | 0 | 0 | 58315 |
| S/G/Y/R/B/O |
NT_030852 | AC011815 | 33473490 | 3 |   |   | AC090407 | 33457891 | 1 | 17594 | 0 | 0 | 17594 |
| S/G/Y/R/B/O |
NT_030852 | AC011815 | 33473490 | 3 |   |   | AP001364 | 33555833 | 1 | 58330 | 0 | 0 | 58330 |
| S/G/Y/R/B/O |
NT_030852 | AP001165 | 33555833 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_030852 | AP001165 | 33555833 | 1 | chr18 | NT_030852 | AC015967 | 33285998 | 3 | 117334 | 14460 | 14255 | 146049 |
| S/G/Y/R/B/O |
NT_030852 | AP001165 | 33555833 | 1 | chr18 | NT_030852 | AC068513 | 33457891 | 3 | 70432 | 12092 | 3371 | 85895 |
| S/G/Y/R/B/O |
NT_030852 | AP001165 | 33555833 | 1 |   |   | AC090407 | 33457891 | 1 | 87820 | 17435 | 15261 | 120516 |
| S/G/Y/R/B/O |
NT_030852 | AP001165 | 33555833 | 1 |   |   | AP001364 | 33457891 | 1 | 113799 | 19467 | 3371 | 136637 |
| |
|
|
|