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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033909 | AC013558 | 70331073 | 3 | chr18 | NT_033909 | AC091305 | 70464629 | 1 | 31102 | 0 | 31018 | 62120 |
| S/G/Y/R/B/O |
NT_033909 | AC013558 | 70331073 | 3 | chr18 | NT_033910 | AC023395 | 70182866 | 3 | 53042 | 0 | 0 | 53042 |
| S/G/Y/R/B/O |
NT_033909 | AC013558 | 70331073 | 3 | chr18 | NT_033909 | AC079894 | 70506279 | 1 | 62743 | 0 | 0 | 62743 |
| S/G/Y/R/B/O |
NT_033909 | AC091305 | 70464629 | 1 | chr18 | NT_033909 | AC079894 | 70506279 | 1 | 141144 | 4395 | 30259 | 175798 |
| S/G/Y/R/B/O |
NT_033909 | AC091305 | 70464629 | 1 | chr18 | NT_033909 | AC079259 | 70727956 | 1 | 22603 | 1127 | 2197 | 25927 |
| S/G/Y/R/B/O |
NT_033909 | AC091305 | 70464629 | 1 | chr18 | NT_033909 | AC096865 | 70581929 | 3 | 47408 | 0 | 0 | 47408 |
| S/G/Y/R/B/O |
NT_033909 | AC091305 | 70464629 | 1 |   |   | AC091646 | 70506279 | 1 | 27147 | 0 | 0 | 27147 |
| S/G/Y/R/B/O |
NT_033909 | AC079894 | 70506279 | 1 | chr18 | NT_033909 | AC096865 | 70581929 | 3 | 32381 | 2196 | 6028 | 40605 |
| S/G/Y/R/B/O |
NT_033909 | AC079894 | 70506279 | 1 | chr18 | NT_033909 | AC013558 | 70331073 | 3 | 62743 | 0 | 0 | 62743 |
| S/G/Y/R/B/O |
NT_033909 | AC079894 | 70506279 | 1 | chr18 | NT_033909 | AC079259 | 70727956 | 1 | 22562 | 0 | 2198 | 24760 |
| S/G/Y/R/B/O |
NT_033909 | AC079894 | 70506279 | 1 |   |   | AC091646 | 70464629 | 1 | 27204 | 0 | 1268 | 28472 |
| S/G/Y/R/B/O |
NT_033909 | AC096865 | 70581929 | 3 | chr18 | NT_033909 | AC079259 | 70727956 | 1 | 104369 | 5352 | 55601 | 165322 |
| S/G/Y/R/B/O |
NT_033909 | AC096865 | 70581929 | 3 | chr18 | NT_033909 | AC037476 | 70744663 | 1 | 62199 | 0 | 0 | 62199 |
| S/G/Y/R/B/O |
NT_033909 | AC096865 | 70581929 | 3 | chr18 | NT_033909 | AC091305 | 70464629 | 1 | 47408 | 0 | 0 | 47408 |
| S/G/Y/R/B/O |
NT_033909 | AC096865 | 70581929 | 3 |   |   | AC091646 | 70464629 | 1 | 147730 | 0 | 0 | 147730 |
| S/G/Y/R/B/O |
NT_033909 | AC079259 | 70727956 | 1 | chr18 | NT_033909 | AC074346 | 70735822 | 1 | 4379 | 1551 | 0 | 5930 |
| S/G/Y/R/B/O |
NT_033909 | AC079259 | 70727956 | 1 | chr18 | NT_033909 | AC037476 | 70744663 | 1 | 43040 | 0 | 5531 | 48571 |
| S/G/Y/R/B/O |
NT_033909 | AC079259 | 70727956 | 1 | chr18 | NT_033909 | AC079894 | 70506279 | 1 | 22562 | 0 | 2198 | 24760 |
| S/G/Y/R/B/O |
NT_033909 | AC079259 | 70727956 | 1 | chr18 | NT_033909 | AC091305 | 70464629 | 1 | 22603 | 1127 | 2197 | 25927 |
| S/G/Y/R/B/O |
NT_033909 | AC079259 | 70727956 | 1 |   |   | AC091646 | 70464629 | 1 | 107575 | 5358 | 12733 | 125666 |
| S/G/Y/R/B/O |
NT_033909 | AC074346 | 70735822 | 1 | chr18 | NT_033909 | AC037476 | 70744663 | 1 | 80683 | 0 | 29150 | 109833 |
| S/G/Y/R/B/O |
NT_033909 | AC074346 | 70735822 | 1 | chr18 | NT_033909 | AC105048 | 70876552 | 3 | 49485 | 0 | 3238 | 52723 |
| S/G/Y/R/B/O |
NT_033909 | AC037476 | 70744663 | 1 | chr18 | NT_033909 | AC105048 | 70876552 | 3 | 22220 | 0 | 0 | 22220 |
| S/G/Y/R/B/O |
NT_033909 | AC037476 | 70744663 | 1 | chr18 | NT_033909 | AC079259 | 70727956 | 1 | 43040 | 0 | 5531 | 48571 |
| S/G/Y/R/B/O |
NT_033909 | AC037476 | 70744663 | 1 | chr18 | NT_033909 | AC096865 | 70581929 | 3 | 62199 | 0 | 0 | 62199 |
| S/G/Y/R/B/O |
NT_033909 | AC037476 | 70744663 | 1 |   |   | AC091646 | 70727956 | 1 | 65958 | 0 | 4346 | 70304 |
| S/G/Y/R/B/O |
NT_033909 | AC105048 | 70876552 | 3 | chr18 | NT_033909 | AC027780 | 71000919 | 1 | 67492 | 1687 | 1039 | 70218 |
| S/G/Y/R/B/O |
NT_033909 | AC105048 | 70876552 | 3 | chr18 | NT_033909 | AC074346 | 70735822 | 1 | 49485 | 0 | 3238 | 52723 |
| S/G/Y/R/B/O |
NT_033909 | AC105048 | 70876552 | 3 | chr18 | NT_033909 | AC105217 | 71000963 | 2 | 96711 | 2780 | 0 | 99491 |
| S/G/Y/R/B/O |
NT_033909 | AC027780 | 71000919 | 1 | chr18 | NT_033909 | AC105217 | 71000963 | 2 | 125037 | 1687 | 1039 | 127763 |
| S/G/Y/R/B/O |
NT_033909 | AC027780 | 71000919 | 1 | chr18 | NT_033909 | AC074246 | 71044276 | 1 | 41338 | 4209 | 0 | 45547 |
| S/G/Y/R/B/O |
NT_033909 | AC105217 | 71000963 | 2 | chr18 | NT_033909 | AC074246 | 71044276 | 1 | 35855 | 6133 | 0 | 41988 |
| S/G/Y/R/B/O |
NT_033909 | AC105217 | 71000963 | 2 | chr18 | NT_033909 | AC105048 | 70876552 | 3 | 96711 | 2780 | 0 | 99491 |
| S/G/Y/R/B/O |
NT_033909 | AC074246 | 71044276 | 1 | chr18 | NT_033909 | AC090415 | 71057272 | 3 | 84184 | 7690 | 19680 | 111554 |
| S/G/Y/R/B/O |
NT_033909 | AC074246 | 71044276 | 1 | chr18 | NT_033909 | AC027780 | 71000919 | 1 | 41338 | 4209 | 0 | 45547 |
| S/G/Y/R/B/O |
NT_033909 | AC074246 | 71044276 | 1 |   |   | AP001387 | 71000963 | 1 | 70596 | 7690 | 21669 | 99955 |
| S/G/Y/R/B/O |
NT_033909 | AC090415 | 71057272 | 3 | chr18 | NT_033909 | AC091691 | 71148676 | 2 | 64442 | 0 | 0 | 64442 |
| S/G/Y/R/B/O |
NT_033909 | AC090415 | 71057272 | 3 |   |   | AP001387 | 71148676 | 1 | 154205 | 0 | 0 | 154205 |
| S/G/Y/R/B/O |
NT_033909 | AC091691 | 71148676 | 2 | chr18 | NT_033909 | AC018600 | 71300649 | 2 | 12307 | 0 | 0 | 12307 |
| S/G/Y/R/B/O |
NT_033909 | AC091691 | 71148676 | 2 |   |   | AP001387 | 71057272 | 1 | 43886 | 0 | 0 | 43886 |
| S/G/Y/R/B/O |
NT_033909 | AC018600 | 71300649 | 2 | chr18 | NT_033909 | AC019240 | 71460118 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033909 | AC018600 | 71300649 | 2 |   |   | AC027230 | 71057272 | 1 | 87043 | 0 | 0 | 87043 |
| S/G/Y/R/B/O |
NT_033909 | AC019240 | 71460118 | 3 | chr18 | NT_033909 | AC090312 | 71601639 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033909 | AC019240 | 71460118 | 3 |   |   | AC027230 | 71148676 | 1 | 114580 | 0 | 0 | 114580 |
| S/G/Y/R/B/O |
NT_033909 | AC019240 | 71460118 | 3 |   |   | AC090757 | 71148676 | 2 | 153229 | 0 | 0 | 153229 |
| S/G/Y/R/B/O |
NT_033909 | AC019240 | 71460118 | 3 |   |   | AP001932 | 72001217 | 1 | 151296 | 0 | 0 | 151296 |
| S/G/Y/R/B/O |
NT_033909 | AC090312 | 71601639 | 3 | chr18 | NT_033909 | AC027458 | 71757045 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033909 | AC090312 | 71601639 | 3 | chr18 | NT_033909 | AP001449 | 72001217 | 1 | 139999 | 0 | 2350 | 142349 |
| S/G/Y/R/B/O |
NT_033909 | AC027458 | 71757045 | 3 | chr18 | NT_033909 | AC069114 | 71939540 | 2 | 87429 | 0 | 0 | 87429 |
| S/G/Y/R/B/O |
NT_033909 | AC069114 | 71939540 | 2 | chr18 | NT_033909 | AP001449 | 72001217 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033909 | AP001449 | 72001217 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033909 | AP001449 | 72001217 | 1 | chr18 | NT_033909 | AC090312 | 71601639 | 3 | 139999 | 0 | 2350 | 142349 |
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