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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_011085 | AC084350 | 56586352 | 1 | chr18 | NT_011085 | AP001772 | 56590653 | 1 | 5320 | 0 | 0 | 5320 |
| S/G/Y/R/B/O |
NT_011085 | AC084350 | 56586352 | 1 | chr18 | NT_011085 | AC003971 | 56737834 | 3 | 29120 | 0 | 11674 | 40794 |
| S/G/Y/R/B/O |
NT_011085 | AC084350 | 56586352 | 1 | chr18 | NT_011085 | AC021490 | 56920017 | 1 | 100206 | 8143 | 22364 | 130713 |
| S/G/Y/R/B/O |
NT_011085 | AC084350 | 56586352 | 1 | chr18 | NT_011085 | AC090340 | 56819094 | 1 | 103235 | 1839 | 22001 | 127075 |
| S/G/Y/R/B/O |
NT_011085 | AC084350 | 56586352 | 1 | chr18 | NT_011085 | AP001543 | 56926556 | 1 | 74598 | 2552 | 12743 | 89893 |
| S/G/Y/R/B/O |
NT_011085 | AC084350 | 56586352 | 1 |   |   | AP001560 | 56926556 | 1 | 44516 | 1745 | 15266 | 61527 |
| S/G/Y/R/B/O |
NT_011085 | AP001772 | 56590653 | 1 | chr18 | NT_011085 | AC007628 | 56597478 | 3 | 80189 | 23060 | 6588 | 109837 |
| S/G/Y/R/B/O |
NT_011085 | AP001772 | 56590653 | 1 | chr18 | NT_011085 | AC003971 | 56737834 | 3 | 38214 | 0 | 6152 | 44366 |
| S/G/Y/R/B/O |
NT_011085 | AP001772 | 56590653 | 1 | chr18 | NT_011085 | AC090340 | 56819094 | 1 | 28431 | 0 | 6152 | 34583 |
| S/G/Y/R/B/O |
NT_011085 | AP001772 | 56590653 | 1 |   |   | AP001560 | 56819094 | 1 | 26088 | 0 | 1284 | 27372 |
| S/G/Y/R/B/O |
NT_011085 | AC007628 | 56597478 | 3 | chr18 | NT_011085 | AC003971 | 56737834 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011085 | AC003971 | 56737834 | 3 | chr18 | NT_011085 | AC090340 | 56819094 | 1 | 69882 | 0 | 0 | 69882 |
| S/G/Y/R/B/O |
NT_011085 | AC003971 | 56737834 | 3 | chr18 | NT_011085 | AC021490 | 56920017 | 1 | 28775 | 2336 | 0 | 31111 |
| S/G/Y/R/B/O |
NT_011085 | AC003971 | 56737834 | 3 | chr18 | NT_011085 | AC084350 | 56586352 | 1 | 29120 | 0 | 11674 | 40794 |
| S/G/Y/R/B/O |
NT_011085 | AC003971 | 56737834 | 3 | chr18 | NT_011085 | AP001772 | 56590653 | 1 | 38214 | 0 | 6152 | 44366 |
| S/G/Y/R/B/O |
NT_011085 | AC003971 | 56737834 | 3 |   |   | AP001560 | 56819094 | 1 | 38573 | 2695 | 0 | 41268 |
| S/G/Y/R/B/O |
NT_011085 | AC090340 | 56819094 | 1 | chr18 | NT_011085 | AC021490 | 56920017 | 1 | 131511 | 4543 | 0 | 136054 |
| S/G/Y/R/B/O |
NT_011085 | AC090340 | 56819094 | 1 | chr18 | NT_011085 | AC084350 | 56586352 | 1 | 103235 | 1839 | 22001 | 127075 |
| S/G/Y/R/B/O |
NT_011085 | AC090340 | 56819094 | 1 | chr18 | NT_011085 | AP001543 | 56926556 | 1 | 65261 | 2064 | 0 | 67325 |
| S/G/Y/R/B/O |
NT_011085 | AC090340 | 56819094 | 1 | chr18 | NT_011085 | AP001772 | 56590653 | 1 | 28431 | 0 | 6152 | 34583 |
| S/G/Y/R/B/O |
NT_011085 | AC090340 | 56819094 | 1 |   |   | AP001560 | 56926556 | 1 | 140467 | 2701 | 4633 | 147801 |
| S/G/Y/R/B/O |
NT_011085 | AC021490 | 56920017 | 1 | chr18 | NT_011085 | AP001543 | 56926556 | 1 | 93123 | 0 | 2059 | 95182 |
| S/G/Y/R/B/O |
NT_011085 | AC021490 | 56920017 | 1 | chr18 | NT_011085 | AC003971 | 56737834 | 3 | 28775 | 2336 | 0 | 31111 |
| S/G/Y/R/B/O |
NT_011085 | AC021490 | 56920017 | 1 | chr18 | NT_011085 | AC084350 | 56586352 | 1 | 100206 | 8143 | 22364 | 130713 |
| S/G/Y/R/B/O |
NT_011085 | AC021490 | 56920017 | 1 |   |   | AP001560 | 56926556 | 1 | 77776 | 3777 | 6355 | 87908 |
| S/G/Y/R/B/O |
NT_011085 | AP001543 | 56926556 | 1 | chr18 | NT_011085 | AJ250235 | 56958716 | 3 | 16854 | 2568 | 13467 | 32889 |
| S/G/Y/R/B/O |
NT_011085 | AP001543 | 56926556 | 1 | chr18 | NT_011085 | AC027097 | 57006468 | 1 | 25001 | 8392 | 11616 | 45009 |
| S/G/Y/R/B/O |
NT_011085 | AP001543 | 56926556 | 1 | chr18 | NT_011085 | AC084350 | 56586352 | 1 | 74598 | 2552 | 12743 | 89893 |
| S/G/Y/R/B/O |
NT_011085 | AP001543 | 56926556 | 1 | chr18 | NT_011085 | AC090340 | 56819094 | 1 | 65261 | 2064 | 0 | 67325 |
| S/G/Y/R/B/O |
NT_011085 | AP001543 | 56926556 | 1 |   |   | AC009270 | 56590653 | 1 | 55998 | 5076 | 2775 | 63849 |
| S/G/Y/R/B/O |
NT_011085 | AP001543 | 56926556 | 1 |   |   | AP001560 | 56958716 | 1 | 26511 | 1618 | 1419 | 29548 |
| S/G/Y/R/B/O |
NT_011085 | AP001543 | 56926556 | 1 |   |   | AP002417 | 56958716 | 1 | 41158 | 2518 | 1019 | 44695 |
| S/G/Y/R/B/O |
NT_011085 | AJ250235 | 56958716 | 3 | chr18 | NT_011085 | AC068072 | 56988202 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011085 | AJ250235 | 56958716 | 3 |   |   | AC009270 | 56958716 | 1 | 15562 | 0 | 22601 | 38163 |
| S/G/Y/R/B/O |
NT_011085 | AJ250235 | 56958716 | 3 |   |   | AP002417 | 56926556 | 1 | 11423 | 1934 | 18760 | 32117 |
| S/G/Y/R/B/O |
NT_011085 | AC068072 | 56988202 | 1 | chr18 | NT_011085 | AC027097 | 57006468 | 1 | 28531 | 749 | 20066 | 49346 |
| S/G/Y/R/B/O |
NT_011085 | AC068072 | 56988202 | 1 | chr18 | NT_011085 | AP001780 | 57141218 | 1 | 18079 | 12964 | 13250 | 44293 |
| S/G/Y/R/B/O |
NT_011085 | AC068072 | 56988202 | 1 |   |   | AC009270 | 56926556 | 1 | 27314 | 0 | 30426 | 57740 |
| S/G/Y/R/B/O |
NT_011085 | AC068072 | 56988202 | 1 |   |   | AC036186 | 57006468 | 1 | 33067 | 2338 | 13179 | 48584 |
| S/G/Y/R/B/O |
NT_011085 | AC068072 | 56988202 | 1 |   |   | AP002417 | 57141218 | 1 | 48698 | 16101 | 4974 | 69773 |
| S/G/Y/R/B/O |
NT_011085 | AC027097 | 57006468 | 1 | chr18 | NT_011085 | AP001780 | 57141218 | 1 | 22607 | 6719 | 12795 | 42121 |
| S/G/Y/R/B/O |
NT_011085 | AC027097 | 57006468 | 1 | chr18 | NT_011085 | AP001543 | 56926556 | 1 | 25001 | 8392 | 11616 | 45009 |
| S/G/Y/R/B/O |
NT_011085 | AC027097 | 57006468 | 1 |   |   | AC009270 | 57141218 | 1 | 79817 | 0 | 23900 | 103717 |
| S/G/Y/R/B/O |
NT_011085 | AC027097 | 57006468 | 1 |   |   | AC036186 | 57141218 | 1 | 34725 | 6695 | 15580 | 57000 |
| S/G/Y/R/B/O |
NT_011085 | AC027097 | 57006468 | 1 |   |   | AP002417 | 57141218 | 1 | 64172 | 16844 | 6518 | 87534 |
| S/G/Y/R/B/O |
NT_011085 | AP001780 | 57141218 | 1 | chr18 | NT_011085 | AC022724 | 57150328 | 3 | 77099 | 8426 | 8941 | 94466 |
| S/G/Y/R/B/O |
NT_011085 | AP001780 | 57141218 | 1 | chr18 | NT_011085 | AC068072 | 56988202 | 1 | 18079 | 12964 | 13250 | 44293 |
| S/G/Y/R/B/O |
NT_011085 | AP001780 | 57141218 | 1 | chr18 | NT_011085 | AC090324 | 57300963 | 1 | 11576 | 0 | 1726 | 13302 |
| S/G/Y/R/B/O |
NT_011085 | AP001780 | 57141218 | 1 | chr18 | NT_011085 | AP001487 | 57404522 | 1 | 16274 | 0 | 1714 | 17988 |
| S/G/Y/R/B/O |
NT_011085 | AP001780 | 57141218 | 1 |   |   | AC009270 | 57141218 | 1 | 22518 | 2625 | 8889 | 34032 |
| S/G/Y/R/B/O |
NT_011085 | AP001780 | 57141218 | 1 |   |   | AC011832 | 57141218 | 1 | 11410 | 4871 | 3851 | 20132 |
| S/G/Y/R/B/O |
NT_011085 | AP001780 | 57141218 | 1 |   |   | AC036186 | 57006468 | 1 | 11750 | 15688 | 20268 | 47706 |
| S/G/Y/R/B/O |
NT_011085 | AC022724 | 57150328 | 3 | chr18 | NT_011085 | AC090324 | 57300963 | 1 | 30002 | 0 | 0 | 30002 |
| S/G/Y/R/B/O |
NT_011085 | AC022724 | 57150328 | 3 | chr18 | NT_011085 | AP001487 | 57404522 | 1 | 50963 | 2422 | 932 | 54317 |
| S/G/Y/R/B/O |
NT_011085 | AC022724 | 57150328 | 3 |   |   | AC011832 | 57404522 | 1 | 66916 | 7970 | 14749 | 89635 |
| S/G/Y/R/B/O |
NT_011085 | AC022724 | 57150328 | 3 |   |   | AC036186 | 57404522 | 1 | 69897 | 3950 | 2690 | 76537 |
| S/G/Y/R/B/O |
NT_011085 | AC090324 | 57300963 | 1 | chr18 | NT_011085 | AP001487 | 57404522 | 1 | 150048 | 0 | 0 | 150048 |
| S/G/Y/R/B/O |
NT_011085 | AC090324 | 57300963 | 1 | chr18 | NT_011085 | AP001780 | 57141218 | 1 | 11576 | 0 | 1726 | 13302 |
| S/G/Y/R/B/O |
NT_011085 | AC090324 | 57300963 | 1 |   |   | AC011832 | 57141218 | 1 | 66341 | 6334 | 5012 | 77687 |
| S/G/Y/R/B/O |
NT_011085 | AP001487 | 57404522 | 1 | chr18 | NT_011085 | AC107896 | 57448294 | 2 | 8931 | 0 | 0 | 8931 |
| S/G/Y/R/B/O |
NT_011085 | AP001487 | 57404522 | 1 | chr18 | NT_011085 | AC022724 | 57150328 | 3 | 50963 | 2422 | 932 | 54317 |
| S/G/Y/R/B/O |
NT_011085 | AP001487 | 57404522 | 1 | chr18 | NT_011085 | AP001780 | 57141218 | 1 | 16274 | 0 | 1714 | 17988 |
| S/G/Y/R/B/O |
NT_011085 | AP001487 | 57404522 | 1 |   |   | AC011832 | 57141218 | 1 | 41283 | 6898 | 6290 | 54471 |
| S/G/Y/R/B/O |
NT_011085 | AC107896 | 57448294 | 2 | chr18 | NT_011085 | AC015988 | 57634249 | 3 | 13993 | 0 | 97301 | 111294 |
| S/G/Y/R/B/O |
NT_011085 | AC107896 | 57448294 | 2 |   |   | AC019039 | 57634249 | 1 | 19273 | 0 | 0 | 19273 |
| S/G/Y/R/B/O |
NT_011085 | AC107896 | 57448294 | 2 |   |   | AP001491 | 57404522 | 1 | 132770 | 2767 | 12975 | 148512 |
| S/G/Y/R/B/O |
NT_011085 | AC015988 | 57634249 | 3 | chr18 | NT_011085 | AC011331 | 57672729 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011085 | AC015988 | 57634249 | 3 |   |   | AC019039 | 57404522 | 1 | 57645 | 0 | 0 | 57645 |
| S/G/Y/R/B/O |
NT_011085 | AC015988 | 57634249 | 3 |   |   | AC090402 | 58016844 | 2 | 38372 | 0 | 72900 | 111272 |
| S/G/Y/R/B/O |
NT_011085 | AC015988 | 57634249 | 3 |   |   | AP001491 | 57448294 | 1 | 108704 | 0 | 7432 | 116136 |
| S/G/Y/R/B/O |
NT_011085 | AC015988 | 57634249 | 3 |   |   | AP001991 | 57448294 | 1 | 28087 | 1553 | 0 | 29640 |
| S/G/Y/R/B/O |
NT_011085 | AC011331 | 57672729 | 3 | chr18 | NT_011085 | AC090236 | 57827344 | 3 | 160498 | 0 | 0 | 160498 |
| S/G/Y/R/B/O |
NT_011085 | AC011331 | 57672729 | 3 | chr18 | NT_011085 | AC079826 | 57840651 | 1 | 24891 | 0 | 2179 | 27070 |
| S/G/Y/R/B/O |
NT_011085 | AC011331 | 57672729 | 3 | chr18 | NT_011085 | AC090228 | 58016844 | 1 | 93365 | 0 | 71131 | 164496 |
| S/G/Y/R/B/O |
NT_011085 | AC011331 | 57672729 | 3 |   |   | AC019039 | 57448294 | 1 | 102919 | 0 | 0 | 102919 |
| S/G/Y/R/B/O |
NT_011085 | AC011331 | 57672729 | 3 |   |   | AP001491 | 57827344 | 1 | 11346 | 0 | 0 | 11346 |
| S/G/Y/R/B/O |
NT_011085 | AC011331 | 57672729 | 3 |   |   | AP001851 | 57827344 | 1 | 123685 | 0 | 11614 | 135299 |
| S/G/Y/R/B/O |
NT_011085 | AC011331 | 57672729 | 3 |   |   | AP001991 | 57827344 | 1 | 81810 | 2122 | 1115 | 85047 |
| S/G/Y/R/B/O |
NT_011085 | AC090236 | 57827344 | 3 | chr18 | NT_011085 | AC105105 | 57837521 | 2 | 10156 | 0 | 0 | 10156 |
| S/G/Y/R/B/O |
NT_011085 | AC090236 | 57827344 | 3 | chr18 | NT_011085 | AC079826 | 57840651 | 1 | 24891 | 0 | 2482 | 27373 |
| S/G/Y/R/B/O |
NT_011085 | AC090236 | 57827344 | 3 | chr18 | NT_011085 | AC090228 | 58016844 | 1 | 86584 | 0 | 71135 | 157719 |
| S/G/Y/R/B/O |
NT_011085 | AC090236 | 57827344 | 3 |   |   | AC019039 | 57672729 | 1 | 102920 | 0 | 0 | 102920 |
| S/G/Y/R/B/O |
NT_011085 | AC090236 | 57827344 | 3 |   |   | AP001851 | 57837521 | 1 | 123686 | 0 | 26147 | 149833 |
| S/G/Y/R/B/O |
NT_011085 | AC090236 | 57827344 | 3 |   |   | AP001991 | 57837521 | 1 | 70490 | 5518 | 1644 | 77652 |
| S/G/Y/R/B/O |
NT_011085 | AC105105 | 57837521 | 2 | chr18 | NT_011085 | AC079826 | 57840651 | 1 | 32621 | 1993 | 9490 | 44104 |
| S/G/Y/R/B/O |
NT_011085 | AC105105 | 57837521 | 2 |   |   | AP001851 | 57827344 | 1 | 10156 | 0 | 0 | 10156 |
| S/G/Y/R/B/O |
NT_011085 | AC079826 | 57840651 | 1 | chr18 | NT_011085 | AC090228 | 58016844 | 1 | 24885 | 0 | 2476 | 27361 |
| S/G/Y/R/B/O |
NT_011085 | AC079826 | 57840651 | 1 | chr18 | NT_011085 | AC011331 | 57672729 | 3 | 24891 | 0 | 2179 | 27070 |
| S/G/Y/R/B/O |
NT_011085 | AC079826 | 57840651 | 1 | chr18 | NT_011085 | AC090236 | 57827344 | 3 | 24891 | 0 | 2482 | 27373 |
| S/G/Y/R/B/O |
NT_011085 | AC079826 | 57840651 | 1 |   |   | AP001991 | 57837521 | 1 | 14423 | 0 | 528 | 14951 |
| S/G/Y/R/B/O |
NT_011085 | AC090228 | 58016844 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_011085 | AC090228 | 58016844 | 1 | chr18 | NT_011085 | AC011331 | 57672729 | 3 | 93365 | 0 | 71131 | 164496 |
| S/G/Y/R/B/O |
NT_011085 | AC090228 | 58016844 | 1 | chr18 | NT_011085 | AC090236 | 57827344 | 3 | 86584 | 0 | 71135 | 157719 |
| S/G/Y/R/B/O |
NT_011085 | AC090228 | 58016844 | 1 |   |   | AC019039 | 57634249 | 1 | 13726 | 0 | 91344 | 105070 |
| S/G/Y/R/B/O |
NT_011085 | AC090228 | 58016844 | 1 |   |   | AP001851 | 57837521 | 1 | 123614 | 2488 | 11612 | 137714 |
| S/G/Y/R/B/O |
NT_011085 | AC090228 | 58016844 | 1 |   |   | AP001991 | 57837521 | 1 | 82920 | 5289 | 1115 | 89324 |
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