Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_004424

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_004424	AL356977	48249844	1	chr1	NT_004424	AC099677	48266262	1	0	0	0	0
S/G/Y/R/B/O	NT_004424	AL356977	48249844	1	chr1	NT_004424	AC093564	48780779	1	61172	0	4600	65772
S/G/Y/R/B/O	NT_004424	AL356977	48249844	1	chr1	NT_004424	AL365445	48866177	3	35121	12600	0	47721
S/G/Y/R/B/O	NT_004424	AC099677	48266262	1	chr1	NT_004424	AC099796	48286718	1	0	0	0	0
S/G/Y/R/B/O	NT_004424	AC099677	48266262	1			AC020781	48866177	1	74985	11495	15882	102362
S/G/Y/R/B/O	NT_004424	AC099796	48286718	1	chr1	NT_004424	AC025990	48328052	1	71172	6572	3933	81677
S/G/Y/R/B/O	NT_004424	AC099796	48286718	1	chr1	NT_032973	AC036239	54300970	1	25075	0	3266	28341
S/G/Y/R/B/O	NT_004424	AC099796	48286718	1	chr1	NT_004424	AL035415	49811576	3	13655	1598	2330	17583
S/G/Y/R/B/O	NT_004424	AC099796	48286718	1			AC011736	48461308	3	28012	0	2601	30613
S/G/Y/R/B/O	NT_004424	AC025990	48328052	1	chr1	NT_004424	AL445183	48461308	3	0	0	0	0
S/G/Y/R/B/O	NT_004424	AC025990	48328052	1	chr1	NT_004424	AL035415	49811576	3	31050	2991	22860	56901
S/G/Y/R/B/O	NT_004424	AL445183	48461308	3	chr1	NT_004424	AL606760	48655082	3	0	0	0	0
S/G/Y/R/B/O	NT_004424	AL445183	48461308	3			AC020781	49735609	1	11146	0	0	11146
S/G/Y/R/B/O	NT_004424	AL445183	48461308	3			AC022728	49735609	1	79581	4314	16930	100825
S/G/Y/R/B/O	NT_004424	AL445183	48461308	3			AL358233	48266262	1	99180	0	0	99180
S/G/Y/R/B/O	NT_004424	AL606760	48655082	3	chr1	NT_004424	AL606523	48773972	3	0	0	0	0
S/G/Y/R/B/O	NT_004424	AL606760	48655082	3	chr1	NT_004424	AC093564	48780779	1	64543	0	0	64543
S/G/Y/R/B/O	NT_004424	AL606760	48655082	3			AC022728	48266262	1	57312	6305	6660	70277
S/G/Y/R/B/O	NT_004424	AL606760	48655082	3			AL358233	48780779	1	23883	0	0	23883
S/G/Y/R/B/O	NT_004424	AL606523	48773972	3	chr1	NT_004424	AC093564	48780779	1	8804	0	0	8804
S/G/Y/R/B/O	NT_004424	AC093564	48780779	1	chr1	NT_004424	AL365445	48866177	3	0	0	0	0
S/G/Y/R/B/O	NT_004424	AC093564	48780779	1	chr1	NT_004424	AL356977	48249844	1	61172	0	4600	65772
S/G/Y/R/B/O	NT_004424	AC093564	48780779	1	chr1	NT_004424	AL606760	48655082	3	64543	0	0	64543
S/G/Y/R/B/O	NT_004424	AC093564	48780779	1			AC022728	48780779	1	19264	0	0	19264
S/G/Y/R/B/O	NT_004424	AL365445	48866177	3	chr1	NT_004424	AC105280	48930520	1	42024	0	0	42024
S/G/Y/R/B/O	NT_004424	AL365445	48866177	3	chr1	NT_004424	AL356977	48249844	1	35121	12600	0	47721
S/G/Y/R/B/O	NT_004424	AC105280	48930520	1	chr1	NT_004424	AC069175	49003215	1	54253	0	0	54253
S/G/Y/R/B/O	NT_004424	AC069175	49003215	1	chr1	NT_004424	AL603915	49041350	3	10459	0	0	10459
S/G/Y/R/B/O	NT_004424	AC069175	49003215	1	chr1	NT_004424	AL391003	49321793	1	36481	0	0	36481
S/G/Y/R/B/O	NT_004424	AC069175	49003215	1			AC073554	48866177	1	41481	0	118582	160063
S/G/Y/R/B/O	NT_004424	AL603915	49041350	3	chr1	NT_004424	AL591720	49051809	3	0	0	0	0
S/G/Y/R/B/O	NT_004424	AL591720	49051809	3	chr1	NT_004424	AL049745	49206300	3	0	0	0	0
S/G/Y/R/B/O	NT_004424	AL591720	49051809	3	chr1	NT_004424	AL391003	49321793	1	29459	0	0	29459
S/G/Y/R/B/O	NT_004424	AL049745	49206300	3	chr1	NT_004424	AL391003	49321793	1	117333	0	0	117333
S/G/Y/R/B/O	NT_004424	AL049745	49206300	3			AC073554	49003215	1	23570	0	0	23570
S/G/Y/R/B/O	NT_004424	AL391003	49321793	1	chr1	NT_004424	AL031427	49333655	3	8282	0	0	8282
S/G/Y/R/B/O	NT_004424	AL391003	49321793	1	chr1	NT_004424	AC069175	49003215	1	36481	0	0	36481
S/G/Y/R/B/O	NT_004424	AL391003	49321793	1	chr1	NT_004424	AL591720	49051809	3	29459	0	0	29459
S/G/Y/R/B/O	NT_004424	AL391003	49321793	1			AC073554	49003215	1	24911	0	0	24911
S/G/Y/R/B/O	NT_004424	AL031427	49333655	3	chr1	NT_004424	AL353898	49485692	3	0	0	100	100
S/G/Y/R/B/O	NT_004424	AL353898	49485692	3	chr1	NT_004424	AL161915	49582967	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004424	AL161915	49582967	3	chr1	NT_004424	AL357673	49604693	2	0	1998	0	1998
S/G/Y/R/B/O	NT_004424	AL357673	49604693	2	chr1	NT_004424	AL354778	49735609	1	0	0	0	0
S/G/Y/R/B/O	NT_004424	AL357673	49604693	2			AL161644	49604693	3	77980	0	0	77980
S/G/Y/R/B/O	NT_004424	AL354778	49735609	1	chr1	NT_004424	AL035415	49811576	3	72130	0	0	72130
S/G/Y/R/B/O	NT_004424	AL354778	49735609	1			AL161644	49811576	3	42137	0	0	42137
S/G/Y/R/B/O	NT_004424	AL035415	49811576	3	chr1	NT_004424	AL356458	50011921	3	0	0	0	0
S/G/Y/R/B/O	NT_004424	AL035415	49811576	3	chr1	NT_004424	AC025990	48328052	1	31050	2991	22860	56901
S/G/Y/R/B/O	NT_004424	AL035415	49811576	3	chr1	NT_004424	AC099796	48286718	1	13655	1598	2330	17583
S/G/Y/R/B/O	NT_004424	AL356458	50011921	3	chr1	NT_004424	AL591415	50127676	3	0	0	0	0
S/G/Y/R/B/O	NT_004424	AL356458	50011921	3	chr1	NT_032978	AC022754	46581733	1	43006	0	7605	50611
S/G/Y/R/B/O	NT_004424	AL356458	50011921	3	chr1	NT_032978	AL607122	46509209	1	14069	0	0	14069
S/G/Y/R/B/O	NT_004424	AL356458	50011921	3			AC034172	46581733	1	38379	5253	4219	47851
S/G/Y/R/B/O	NT_004424	AL591415	50127676	3	chr1	NT_004424	AC013447	50235896	3	27853	0	0	27853
S/G/Y/R/B/O	NT_004424	AL591415	50127676	3			AC034172	50235896	1	69680	0	30189	99869
S/G/Y/R/B/O	NT_004424	AL591415	50127676	3			AL691459	50235896	1	27853	0	0	27853
S/G/Y/R/B/O	NT_004424	AC013447	50235896	3	chr1	NT_004424	AC096541	50374186	1	44138	0	0	44138
S/G/Y/R/B/O	NT_004424	AC013447	50235896	3			AC034172	50235896	1	23090	0	8840	31930
S/G/Y/R/B/O	NT_004424	AC013447	50235896	3			AL691459	50127676	1	160297	0	0	160297
S/G/Y/R/B/O	NT_004424	AC096541	50374186	1	chr1	NT_004424	AL451079	50475766	1	77748	2132	0	79880
S/G/Y/R/B/O	NT_004424	AC096541	50374186	1			AL691459	50475766	1	44129	0	0	44129
S/G/Y/R/B/O	NT_004424	AL451079	50475766	1	chr1	NT_004424	AL356289	50629986	3	0	0	0	0
S/G/Y/R/B/O	NT_004424	AL451079	50475766	1			AC099679	50374186	1	106386	0	0	106386
S/G/Y/R/B/O	NT_004424	AL451079	50475766	1			AL139427	50374186	1	37578	2610	3050	43238
S/G/Y/R/B/O	NT_004424	AL356289	50629986	3	chr1	NT_004424	AL109659	50669868	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004424	AL356289	50629986	3			AL139427	50669868	1	36657	2371	0	39028
S/G/Y/R/B/O	NT_004424	AL109659	50669868	3	chr1	NT_004424	AL359959	50849547	3	0	0	0	0
S/G/Y/R/B/O	NT_004424	AL109659	50669868	3	chr1	NT_004424	AC055887	50894396	1	51482	8197	15793	75472
S/G/Y/R/B/O	NT_004424	AL109659	50669868	3			AL139427	50894396	1	20491	0	0	20491
S/G/Y/R/B/O	NT_004424	AL359959	50849547	3	chr1	NT_004424	AC055887	50894396	1	25429	6846	2159	34434
S/G/Y/R/B/O	NT_004424	AC055887	50894396	1	chr1	NT_004424	AC055886	50898041	1	0	0	2633	2633
S/G/Y/R/B/O	NT_004424	AC055887	50894396	1	chr1	NT_004424	AL109659	50669868	3	51482	8197	15793	75472
S/G/Y/R/B/O	NT_004424	AC055887	50894396	1	chr1	NT_004424	AL356968	51073046	1	38023	7131	2261	47415
S/G/Y/R/B/O	NT_004424	AC055886	50898041	1	chr1	NT_004424	AL356968	51073046	1	0	0	0	0
S/G/Y/R/B/O	NT_004424	AC055886	50898041	1	chr1	NT_032973	AC026289	55367511	1	29086	0	9799	38885
S/G/Y/R/B/O	NT_004424	AC055886	50898041	1	chr1	NT_032973	AL603840	55371754	3	120188	0	3009	123197
S/G/Y/R/B/O	NT_004424	AC055886	50898041	1			AC055885	55367511	1	87254	0	0	87254
S/G/Y/R/B/O	NT_004424	AC055886	50898041	1			AL157949	50669868	1	23161	11109	0	34270
S/G/Y/R/B/O	NT_004424	AC055886	50898041	1			AL691473	55371754	1	82581	0	2834	85415
S/G/Y/R/B/O	NT_004424	AL356968	51073046	1	chr1	NT_004424	AL391844	51280991	3	0	4358	0	4358
S/G/Y/R/B/O	NT_004424	AL356968	51073046	1	chr1	NT_004424	AC055887	50894396	1	38023	7131	2261	47415
S/G/Y/R/B/O	NT_004424	AL356968	51073046	1			AL389920	50849547	1	11053	9219	1710	21982
S/G/Y/R/B/O	NT_004424	AL391844	51280991	3	chr1	NT_004424	AL355809	51378837	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004424	AL391844	51280991	3			AL389920	51073046	1	79813	0	2043	81856
S/G/Y/R/B/O	NT_004424	AL355809	51378837	3	chr1	NT_004424	AC097062	51497177	3	34763	0	0	34763
S/G/Y/R/B/O	NT_004424	AL355809	51378837	3			AC023341	51073046	1	68471	4521	23638	96630
S/G/Y/R/B/O	NT_004424	AC097062	51497177	3	chr1	NT_004424	AL645507	51648044	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004424	AC097062	51497177	3			AC023341	51280991	1	75792	0	0	75792
S/G/Y/R/B/O	NT_004424	AL645507	51648044	3	chr1	NT_004424	AC099788	51748787	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004424	AL645507	51648044	3			AL139223	51748787	1	34935	0	0	34935
S/G/Y/R/B/O	NT_004424	AL645507	51648044	3			AL390245	51748787	1	70669	4890	3315	78874
S/G/Y/R/B/O	NT_004424	AC099788	51748787	3	chr1	NT_004424	AC092264	51895466	3	39885	0	0	39885
S/G/Y/R/B/O	NT_004424	AC099788	51748787	3			AL139223	51895466	1	77476	2199	0	79675
S/G/Y/R/B/O	NT_004424	AC099788	51748787	3			AL360016	51895466	1	31701	13950	2006	47657
S/G/Y/R/B/O	NT_004424	AC099788	51748787	3			AL390245	51895466	1	66856	0	0	66856
S/G/Y/R/B/O	NT_004424	AC092264	51895466	3	chr1	NT_004424	AL590432	51968907	3	0	0	0	0
S/G/Y/R/B/O	NT_004424	AC092264	51895466	3			AC025408	51648044	1	33336	0	2425	35761
S/G/Y/R/B/O	NT_004424	AC092264	51895466	3			AC027663	51648044	3	109411	0	0	109411
S/G/Y/R/B/O	NT_004424	AC092264	51895466	3			AL360016	51748787	1	12050	2586	1771	16407
S/G/Y/R/B/O	NT_004424	AL590432	51968907	3	chr1	NT_004424	AL031294	52053752	3	0	0	0	0
S/G/Y/R/B/O	NT_004424	AL590432	51968907	3			AC011130	51748787	1	93569	0	1406	94975
S/G/Y/R/B/O	NT_004424	AL590432	51968907	3			AC025408	51748787	1	51741	0	10665	62406
S/G/Y/R/B/O	NT_004424	AL590432	51968907	3			AC027663	51748787	3	72402	0	0	72402
S/G/Y/R/B/O	NT_004424	AL590432	51968907	3			AL606474	51748787	1	17467	4217	3238	24922
S/G/Y/R/B/O	NT_004424	AL031294	52053752	3	chr1	NT_004424	AL356916	52135709	3	0	0	101	101
S/G/Y/R/B/O	NT_004424	AL031294	52053752	3			AC011130	51748787	1	43230	2206	2509	47945
S/G/Y/R/B/O	NT_004424	AL031294	52053752	3			AC025408	51748787	1	48877	6400	1094	56371
S/G/Y/R/B/O	NT_004424	AL031294	52053752	3			AL606474	52135709	1	21208	12223	10518	43949
S/G/Y/R/B/O	NT_004424	AL356916	52135709	3	chr1	NT_004424	AL445527	52252620	3	0	0	0	0
S/G/Y/R/B/O	NT_004424	AL356916	52135709	3	chr1	NT_004424	AC073923	53085707	1	53237	1946	1275	56458
S/G/Y/R/B/O	NT_004424	AL356916	52135709	3			AL606474	53058457	1	13533	10572	0	24105
S/G/Y/R/B/O	NT_004424	AL445527	52252620	3	chr1	NT_004424	AL356789	52260742	3	0	0	100	100
S/G/Y/R/B/O	NT_004424	AL356789	52260742	3	chr1	NT_004424	AL390023	52359744	3	0	0	0	0
S/G/Y/R/B/O	NT_004424	AL356789	52260742	3	chr1	NT_004424	AC073923	53085707	1	83100	1268	1074	85442
S/G/Y/R/B/O	NT_004424	AL390023	52359744	3	chr1	NT_004424	AC105766	52490881	3	5498	0	0	5498
S/G/Y/R/B/O	NT_004424	AC105766	52490881	3	chr1	NT_004424	AL591602	52577151	3	2207	0	0	2207
S/G/Y/R/B/O	NT_004424	AC105766	52490881	3			AL121991	52490881	1	51404	0	0	51404
S/G/Y/R/B/O	NT_004424	AL591602	52577151	3	chr1	NT_004424	AL645730	52724932	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004424	AL645730	52724932	3	chr1	NT_004424	AL139255	52876734	3	0	0	0	0
S/G/Y/R/B/O	NT_004424	AL139255	52876734	3	chr1	NT_004424	AC099784	52896375	1	2000	0	0	2000
S/G/Y/R/B/O	NT_004424	AL139255	52876734	3			AC020781	52577151	1	15193	0	0	15193
S/G/Y/R/B/O	NT_004424	AC099784	52896375	1	chr1	NT_004424	AL356976	53058457	1	59812	0	0	59812
S/G/Y/R/B/O	NT_004424	AC099784	52896375	1	chr11	NT_024275	AC022696	14990190	1	98827	18653	18748	136228
S/G/Y/R/B/O	NT_004424	AC099784	52896375	1			AC020781	52896375	1	16978	6117	5346	28441
S/G/Y/R/B/O	NT_004424	AL356976	53058457	1	chr1	NT_004424	AC073923	53085707	1	0	0	0	0
S/G/Y/R/B/O	NT_004424	AL356976	53058457	1	chr11	NT_024275	AC022696	14990190	1	42062	4131	5767	51960
S/G/Y/R/B/O	NT_004424	AL356976	53058457	1	chr1	NT_004424	AL591167	53130491	3	36962	0	0	36962
S/G/Y/R/B/O	NT_004424	AC073923	53085707	1	chr1	NT_004424	AL591167	53130491	3	0	0	0	0
S/G/Y/R/B/O	NT_004424	AC073923	53085707	1	chr1	NT_004424	AL356789	52260742	3	83100	1268	1074	85442
S/G/Y/R/B/O	NT_004424	AC073923	53085707	1	chr1	NT_004424	AL356916	52135709	3	53237	1946	1275	56458
S/G/Y/R/B/O	NT_004424	AL591167	53130491	3	chr1	NT_004424	AL138849	53188676	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004424	AL591167	53130491	3	chr1	NT_004424	AL356976	53058457	1	36962	0	0	36962
S/G/Y/R/B/O	NT_004424	AL138849	53188676	3	chr1	NT_004424	AL513218	53315682	1	66878	0	0	66878
S/G/Y/R/B/O	NT_004424	AL513218	53315682	1	chr1	NT_004424	AL445685	53351357	3	0	0	0	0
S/G/Y/R/B/O	NT_004424	AL513218	53315682	1	chr1	NT_004424	AC105754	53550957	3	20283	0	0	20283
S/G/Y/R/B/O	NT_004424	AL513218	53315682	1			AL138792	53550957	1	50064	1765	16488	68317
S/G/Y/R/B/O	NT_004424	AL445685	53351357	3	chr1	NT_004424	AL606761	53407313	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004424	AL445685	53351357	3			AL355676	53188676	1	49051	0	0	49051
S/G/Y/R/B/O	NT_004424	AL606761	53407313	3	chr1	NT_004424	AL139156	53413973	3	0	1997	0	1997
S/G/Y/R/B/O	NT_004424	AL139156	53413973	3	chr1	NT_004424	AC105754	53550957	3	42305	0	0	42305
S/G/Y/R/B/O	NT_004424	AL139156	53413973	3			AC026909	60022127	1	61810	14546	10078	86434
S/G/Y/R/B/O	NT_004424	AC105754	53550957	3
S/G/Y/R/B/O	NT_004424	AC105754	53550957	3	chr1	NT_004424	AL513218	53315682	1	20283	0	0	20283
S/G/Y/R/B/O	NT_004424	AC105754	53550957	3			AC026909	53407313	1	42934	15705	2135	60774
S/G/Y/R/B/O	NT_004424	AC105754	53550957	3			AL138792	101734627	1	41721	0	0	41721