Home    Genome Browser    BLAT Search    Help
  Chromosome 1 - Clone Overlaps - Single Contig
 
Description of this page Main Reports Page Main Assembly Page Main Overlap Page Whole Chromosome Single Contigs

Line color code:

  • White: overlap with immediately succeeding clone
  • Green: overlap with clone in same contig
  • Pink: overlap with clone in same chromosome, different contig
  • Red: overlap with clone on different chromosome
  • Yellow: overlap with clone not used in assembly
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004658
 
LinksContig1Acc1Start1PhsChr2Contig2Acc2Start2PhsStrong OverlapMedium OverlapWeak OverlapTotal Overlap
S/G/Y/R/B/O NT_004658AC098656876903301chr1NT_004658AL450462878409911153770015377
S/G/Y/R/B/O NT_004658AL450462878409911chr1NT_004658AL161797879330173532740053274
S/G/Y/R/B/O NT_004658AL161797879330173chr1NT_004658AL3914978803158832000002000
S/G/Y/R/B/O NT_004658AL161797879330173  AL512367878409911373540037354
S/G/Y/R/B/O NT_004658AL391497880315883chr1NT_004658AC0995688821876832574002574
S/G/Y/R/B/O NT_004658AL391497880315883chr1NT_021905AC09893619503226111570316415899541113
S/G/Y/R/B/O NT_004658AL391497880315883  AC079091878409911697726397208878257
S/G/Y/R/B/O NT_004658AL391497880315883  AL51236787933017178497045681124178
S/G/Y/R/B/O NT_004658AC099568882187683chr1NT_004658AC093423882621123730260073026
S/G/Y/R/B/O NT_004658AC099568882187683chr1NT_021905AC098936195032261110114183033212276
S/G/Y/R/B/O NT_004658AC093423882621123chr1NT_004658AC099569884096743375330037533
S/G/Y/R/B/O NT_004658AC099569884096743chr1NT_004658AL5962148853445432052002052
S/G/Y/R/B/O NT_004658AC099569884096743  AC021385884096741868691848088717
S/G/Y/R/B/O NT_004658AL596214885344543chr1NT_004658AC116040886090791313650031365
S/G/Y/R/B/O NT_004658AL596214885344543  AC021385885344541742880074288
S/G/Y/R/B/O NT_004658AL596214885344543  AL691464886090791470130047013
S/G/Y/R/B/O NT_004658AC116040886090791chr1NT_004658AL355818886907952437170043717
S/G/Y/R/B/O NT_004658AC116040886090791  AL69146488534454110357300103573
S/G/Y/R/B/O NT_004658AL355818886907952chr1NT_004658AL1363828874902330000
S/G/Y/R/B/O NT_004658AL355818886907952  AL691464886090791437300043730
S/G/Y/R/B/O NT_004658AL136382887490233chr1NT_004658AL3589508888541018658008658
S/G/Y/R/B/O NT_004658AL136382887490233chr1NT_004658AL354988888932191650550065055
S/G/Y/R/B/O NT_004658AL358950888854101chr1NT_004658AL3549888889321917131306671379
S/G/Y/R/B/O NT_004658AL358950888854101chr1NT_004658AL122002889777523773900077390
S/G/Y/R/B/O NT_004658AL358950888854101  AF039401888854103344550034455
S/G/Y/R/B/O NT_004658AL354988888932191chr1NT_004658AC0680718895752410000
S/G/Y/R/B/O NT_004658AL354988888932191chr1NT_004658AL122002889777523488742589616657629
S/G/Y/R/B/O NT_004658AL354988888932191chr1NT_004658AL136382887490233650550065055
S/G/Y/R/B/O NT_004658AL354988888932191  AF039401888932193155190338418903
S/G/Y/R/B/O NT_004658AC068071889575241chr1NT_004658AL1220028897775230000
S/G/Y/R/B/O NT_004658AC068071889575241chr1NT_004658AL049597891804153867640101087774
S/G/Y/R/B/O NT_004658AC068071889575241chr1NT_004658AL3562708908077026742617172570994852
S/G/Y/R/B/O NT_004658AL122002889777523chr1NT_004658AL356270890807702187700018770
S/G/Y/R/B/O NT_004658AL122002889777523chr1NT_004658AL354988888932191488742589616657629
S/G/Y/R/B/O NT_004658AL122002889777523chr1NT_004658AL358950888854101773900077390
S/G/Y/R/B/O NT_004658AL122002889777523  AF039401890807703348660034866
S/G/Y/R/B/O NT_004658AL356270890807702chr1NT_004658AL049597891804153003820538205
S/G/Y/R/B/O NT_004658AL356270890807702chr1NT_004658AC0680718895752416742617172570994852
S/G/Y/R/B/O NT_004658AL049597891804153chr1NT_004658AL3559818930823530196801968
S/G/Y/R/B/O NT_004658AL049597891804153chr1NT_004658AC068071889575241867640101087774
S/G/Y/R/B/O NT_004658AL355981893082353chr1NT_004658AL1219898933450930199801998
S/G/Y/R/B/O NT_004658AL121989893345093chr1NT_004658AC093155894597123174910017491
S/G/Y/R/B/O NT_004658AL121989893345093  AL445427893082351110780011078
S/G/Y/R/B/O NT_004658AC093155894597123chr1NT_004658AL1391398963194530199901999
S/G/Y/R/B/O NT_004658AC093155894597123  AL445427896319451158758136460172404
S/G/Y/R/B/O NT_004658AL139139896319453chr1NT_004658AC0990628971224410199601996
S/G/Y/R/B/O NT_004658AC099062897122441chr1NT_004658AC092392897970693254740025474
S/G/Y/R/B/O NT_004658AC092392897970693chr1NT_004658AC104838898698761412830041283
S/G/Y/R/B/O NT_004658AC104838898698761chr1NT_004658AC103552899285621429990042999
S/G/Y/R/B/O NT_004658AC103552899285621chr1NT_004658AC099064900893993859360085936
S/G/Y/R/B/O NT_004658AC103552899285621chr1NT_004658AC024488901389541556221602057224
S/G/Y/R/B/O NT_004658AC099064900893993chr1NT_004658AC0244889013895419740916001348100357
S/G/Y/R/B/O NT_004658AC024488901389541chr1NT_004658AL35610390144412364288515122966032
S/G/Y/R/B/O NT_004658AC024488901389541chr1NT_004658AC103552899285621556221602057224
S/G/Y/R/B/O NT_004658AC024488901389541  AC0117931152441951128910012891
S/G/Y/R/B/O NT_004658AL356103901444123chr1NT_004658AL5907869025648130000
S/G/Y/R/B/O NT_004658AL356103901444123  AC011793901444121998710099871
S/G/Y/R/B/O NT_004658AL590786902564813chr1NT_004658AL4454379026258930000
S/G/Y/R/B/O NT_004658AL445437902625893chr1NT_004658AL35514490362679300100100
S/G/Y/R/B/O NT_004658AL445437902625893  AC011793901389541491400049140
S/G/Y/R/B/O NT_004658AL445437902625893  AL592083903626792577330057733
S/G/Y/R/B/O NT_004658AL355144903626793chr1NT_004658AL4510049049799010000
S/G/Y/R/B/O NT_004658AL355144903626793chr1NT_004658AC09893291065673149289567151555475
S/G/Y/R/B/O NT_004658AL355144903626793  AL59208390262589211911100119111
S/G/Y/R/B/O NT_004658AL451004904979901chr1NT_004658AC0935789052823213777501660154376
S/G/Y/R/B/O NT_004658AL451004904979901chr1NT_004658AC016015905748141343042044816944517
S/G/Y/R/B/O NT_004658AL451004904979901chr1NT_004658AL136381912127553693880069388
S/G/Y/R/B/O NT_004658AC093578905282321chr1NT_004658AC01601590574814112938629751940134301
S/G/Y/R/B/O NT_004658AC093578905282321chr1NT_004658AC026138906747931535554059135058964
S/G/Y/R/B/O NT_004658AC016015905748141chr1NT_004658AC026138906747931302460134931595
S/G/Y/R/B/O NT_004658AC016015905748141chr1NT_004658AL445438906996663110370011037
S/G/Y/R/B/O NT_004658AC016015905748141chr1NT_004658AL451004904979901343042044816944517
S/G/Y/R/B/O NT_004658AC026138906747931chr1NT_004658AL4454389069966636801520749383892602
S/G/Y/R/B/O NT_004658AC026138906747931chr1NT_004658AC093578905282321535554059135058964
S/G/Y/R/B/O NT_004658AL445438906996663chr1NT_004658AL0498619080547230000
S/G/Y/R/B/O NT_004658AL445438906996663chr1NT_004658AC016015905748141110370011037
S/G/Y/R/B/O NT_004658AL049861908054723chr1NT_004658AC093432909486351289560028956
S/G/Y/R/B/O NT_004658AL049861908054723  AL356436909486351837320469088422
S/G/Y/R/B/O NT_004658AC093432909486351chr1NT_004658AC09893291065673119005709019714
S/G/Y/R/B/O NT_004658AC093432909486351  AL356436908054721151090015109
S/G/Y/R/B/O NT_004658AC098932910656731chr1NT_004658AC1044599107738710000
S/G/Y/R/B/O NT_004658AC098932910656731chr1NT_004658AL35514490362679349289567151555475
S/G/Y/R/B/O NT_004658AC098932910656731  AL592083903626792493050049305
S/G/Y/R/B/O NT_004658AC104459910773871chr1NT_004658AL1363819121275530000
S/G/Y/R/B/O NT_004658AC104459910773871chr1NT_004658AC021689916828552591830059183
S/G/Y/R/B/O NT_004658AC104459910773871chr1NT_004658AC099063916976041229712268025239
S/G/Y/R/B/O NT_004658AC104459910773871chr1NT_004658AL160008915168213200470020047
S/G/Y/R/B/O NT_004658AL136381912127553chr1NT_004658AL4459919134460230000
S/G/Y/R/B/O NT_004658AL136381912127553chr1NT_004658AL451004904979901693880069388
S/G/Y/R/B/O NT_004658AL136381912127553  AL359825915168211541572399349660052
S/G/Y/R/B/O NT_004658AL445991913446023chr1NT_004658AL1394169148657111907201357332645
S/G/Y/R/B/O NT_004658AL445991913446023  AL359825914865711288970028897
S/G/Y/R/B/O NT_004658AL139416914865711chr1NT_004658AL160008915168213440290044029
S/G/Y/R/B/O NT_004658AL160008915168213chr1NT_004658AC0216899168285520000
S/G/Y/R/B/O NT_004658AL160008915168213chr1NT_004658AC104459910773871200470020047
S/G/Y/R/B/O NT_004658AC021689916828552chr1NT_004658AC099063916976041491090049109
S/G/Y/R/B/O NT_004658AC021689916828552chr1NT_004658AC104459910773871591830059183
S/G/Y/R/B/O NT_004658AC099063916976041         
S/G/Y/R/B/O NT_004658AC099063916976041chr1NT_004658AC104459910773871229712268025239