Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_021905

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_021905	AL359090	191734147	1	chr1	NT_021905	AL365208	191740257	1	0	0	0	0
S/G/Y/R/B/O	NT_021905	AL359090	191734147	1	chr1	NT_021905	AC105940	192658200	3	115538	5361	0	120899
S/G/Y/R/B/O	NT_021905	AL365208	191740257	1	chr1	NT_021905	AL359702	191761069	1	92521	7696	8305	108522
S/G/Y/R/B/O	NT_021905	AL359702	191761069	1	chr1	NT_021905	AC098934	191768247	1	0	0	0	0
S/G/Y/R/B/O	NT_021905	AL359702	191761069	1	chr1	NT_021905	AC096533	192133618	1	15287	2377	5230	22894
S/G/Y/R/B/O	NT_021905	AC098934	191768247	1	chr1	NT_021905	AC096632	192028913	1	41554	0	8540	50094
S/G/Y/R/B/O	NT_021905	AC096632	192028913	1	chr1	NT_021905	AL713965	192029055	1	0	0	0	0
S/G/Y/R/B/O	NT_021905	AL713965	192029055	1	chr1	NT_021905	AL451008	192080065	2	62320	0	0	62320
S/G/Y/R/B/O	NT_021905	AL713965	192029055	1			AL360009	191768247	1	62320	0	0	62320
S/G/Y/R/B/O	NT_021905	AL451008	192080065	2	chr1	NT_021905	AC096533	192133618	1	0	0	0	0
S/G/Y/R/B/O	NT_021905	AL451008	192080065	2			AL360009	192080065	1	62369	0	0	62369
S/G/Y/R/B/O	NT_021905	AC096533	192133618	1	chr1	NT_021905	AL357131	192259438	1	41254	0	0	41254
S/G/Y/R/B/O	NT_021905	AC096533	192133618	1	chr1	NT_021905	AL359702	191761069	1	15287	2377	5230	22894
S/G/Y/R/B/O	NT_021905	AL357131	192259438	1	chr1	NT_021905	AL451082	192595845	3	0	0	0	0
S/G/Y/R/B/O	NT_021905	AL357131	192259438	1	chr1	NT_021905	AC098933	194838111	1	11638	0	0	11638
S/G/Y/R/B/O	NT_021905	AL357131	192259438	1	chr1	NT_021905	AC098936	195032261	1	97161	0	0	97161
S/G/Y/R/B/O	NT_021905	AL357131	192259438	1	chr10	NT_033986	AL157895	19831912	3	47591	0	0	47591
S/G/Y/R/B/O	NT_021905	AL357131	192259438	1	chr10	NT_033986	AL354695	19706053	3	125759	0	0	125759
S/G/Y/R/B/O	NT_021905	AL357131	192259438	1	chr10	NT_033921	AL589943	19468943	1	22080	0	0	22080
S/G/Y/R/B/O	NT_021905	AL451082	192595845	3	chr1	NT_021905	AC105940	192658200	3	54101	0	0	54101
S/G/Y/R/B/O	NT_021905	AC105940	192658200	3	chr1	NT_021905	AL513326	192822609	3	0	0	0	0
S/G/Y/R/B/O	NT_021905	AC105940	192658200	3	chr1	NT_021905	AL359090	191734147	1	115538	5361	0	120899
S/G/Y/R/B/O	NT_021905	AL513326	192822609	3	chr1	NT_021905	AL359837	192852934	3	0	2000	0	2000
S/G/Y/R/B/O	NT_021905	AL359837	192852934	3	chr1	NT_021905	AC022000	192979691	1	27284	0	20647	47931
S/G/Y/R/B/O	NT_021905	AC022000	192979691	1	chr1	NT_021905	AC096676	193000452	1	46402	0	35137	81539
S/G/Y/R/B/O	NT_021905	AC096676	193000452	1	chr1	NT_021905	AL513343	193087503	2	58217	0	0	58217
S/G/Y/R/B/O	NT_021905	AC096676	193000452	1			AL390207	192979691	1	18507	2155	11907	32569
S/G/Y/R/B/O	NT_021905	AL513343	193087503	2	chr1	NT_021905	AC114402	193232722	1	21180	0	0	21180
S/G/Y/R/B/O	NT_021905	AL513343	193087503	2			AL390207	193232722	1	76856	15060	16114	108030
S/G/Y/R/B/O	NT_021905	AC114402	193232722	1	chr1	NT_021905	AL445983	193399595	1	24581	0	0	24581
S/G/Y/R/B/O	NT_021905	AC114402	193232722	1			AL390207	193232722	1	47180	6325	2957	56462
S/G/Y/R/B/O	NT_021905	AL445983	193399595	1	chr1	NT_021905	AC096645	193437105	1	128146	0	2784	130930
S/G/Y/R/B/O	NT_021905	AL445983	193399595	1	chr1	NT_021905	AC073251	193601650	1	10084	0	0	10084
S/G/Y/R/B/O	NT_021905	AC096645	193437105	1	chr1	NT_021905	AC073251	193601650	1	28370	0	12948	41318
S/G/Y/R/B/O	NT_021905	AC073251	193601650	1	chr1	NT_021905	AL592146	193602986	3	69177	4290	22733	96200
S/G/Y/R/B/O	NT_021905	AC073251	193601650	1	chr1	NT_021905	AL445983	193399595	1	10084	0	0	10084
S/G/Y/R/B/O	NT_021905	AC073251	193601650	1	chr1	NT_021905	AL592114	193702848	1	19574	3675	0	23249
S/G/Y/R/B/O	NT_021905	AL592146	193602986	3	chr1	NT_021905	AL592114	193702848	1	2000	0	0	2000
S/G/Y/R/B/O	NT_021905	AL592114	193702848	1	chr1	NT_021905	AL627202	193738689	1	139106	2057	0	141163
S/G/Y/R/B/O	NT_021905	AL592114	193702848	1	chr1	NT_021905	AC048369	193893915	1	13965	0	0	13965
S/G/Y/R/B/O	NT_021905	AL592114	193702848	1	chr1	NT_021905	AC073251	193601650	1	19574	3675	0	23249
S/G/Y/R/B/O	NT_021905	AL627202	193738689	1	chr1	NT_021905	AC048369	193893915	1	9611	0	0	9611
S/G/Y/R/B/O	NT_021905	AL627202	193738689	1	chr1	NT_021905	AL606489	193900145	1	21183	0	0	21183
S/G/Y/R/B/O	NT_021905	AC048369	193893915	1	chr1	NT_021905	AL606489	193900145	1	127893	6653	8271	142817
S/G/Y/R/B/O	NT_021905	AC048369	193893915	1	chr1	NT_021905	AL592114	193702848	1	13965	0	0	13965
S/G/Y/R/B/O	NT_021905	AC048369	193893915	1			AL450424	63271941	1	39606	1569	0	41175
S/G/Y/R/B/O	NT_021905	AL606489	193900145	1	chr1	NT_021905	AL512306	194056348	3	36209	0	0	36209
S/G/Y/R/B/O	NT_021905	AL606489	193900145	1	chr1	NT_021905	AL627202	193738689	1	21183	0	0	21183
S/G/Y/R/B/O	NT_021905	AL606489	193900145	1			AC021462	193738689	1	40255	9106	3540	52901
S/G/Y/R/B/O	NT_021905	AL606489	193900145	1			AL450424	193893915	1	56092	12320	26042	94454
S/G/Y/R/B/O	NT_021905	AL512306	194056348	3	chr1	NT_021905	AL161793	194190332	1	0	0	0	0
S/G/Y/R/B/O	NT_021905	AL512306	194056348	3			AC021462	193738689	1	101669	6659	4662	112990
S/G/Y/R/B/O	NT_021905	AL512306	194056348	3			AL450424	193738689	1	54321	2118	9838	66277
S/G/Y/R/B/O	NT_021905	AL161793	194190332	1	chr1	NT_021905	AC096675	194350677	3	64707	0	0	64707
S/G/Y/R/B/O	NT_021905	AL161793	194190332	1			AL355486	194350677	1	120918	9020	2230	132168
S/G/Y/R/B/O	NT_021905	AC096675	194350677	3	chr1	NT_021905	AL391822	194456427	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021905	AC096675	194350677	3			AL355486	194190332	1	41104	6941	0	48045
S/G/Y/R/B/O	NT_021905	AL391822	194456427	3	chr1	NT_021905	AL583832	194569719	2	53369	0	0	53369
S/G/Y/R/B/O	NT_021905	AL391822	194456427	3	chr1	NT_021905	AC018373	194875070	1	84903	0	2322	87225
S/G/Y/R/B/O	NT_021905	AL391822	194456427	3			AL359927	194350677	1	54998	0	0	54998
S/G/Y/R/B/O	NT_021905	AL583832	194569719	2	chr1	NT_021905	AC018711	194670777	3	44499	0	0	44499
S/G/Y/R/B/O	NT_021905	AL583832	194569719	2	chr1	NT_021905	AC018373	194875070	1	106993	0	0	106993
S/G/Y/R/B/O	NT_021905	AL583832	194569719	2			AC093422	194670777	1	23155	0	0	23155
S/G/Y/R/B/O	NT_021905	AL583832	194569719	2			AL359927	194670777	1	87734	0	23133	110867
S/G/Y/R/B/O	NT_021905	AC018711	194670777	3	chr1	NT_021905	AC098933	194838111	1	57569	0	0	57569
S/G/Y/R/B/O	NT_021905	AC018711	194670777	3			AC093422	194456427	1	115924	0	0	115924
S/G/Y/R/B/O	NT_021905	AC098933	194838111	1	chr1	NT_021905	AC018373	194875070	1	0	0	0	0
S/G/Y/R/B/O	NT_021905	AC098933	194838111	1	chr1	NT_021905	AC098936	195032261	1	36617	0	22990	59607
S/G/Y/R/B/O	NT_021905	AC098933	194838111	1	chr1	NT_021905	AL357131	192259438	1	11638	0	0	11638
S/G/Y/R/B/O	NT_021905	AC098933	194838111	1			AC093422	194670777	1	21687	0	0	21687
S/G/Y/R/B/O	NT_021905	AC018373	194875070	1	chr1	NT_021905	AC098936	195032261	1	0	0	0	0
S/G/Y/R/B/O	NT_021905	AC018373	194875070	1	chr5	NT_007072	AC023061	135434473	2	16463	0	0	16463
S/G/Y/R/B/O	NT_021905	AC018373	194875070	1	chr1	NT_021905	AL391822	194456427	3	84903	0	2322	87225
S/G/Y/R/B/O	NT_021905	AC018373	194875070	1	chr1	NT_021905	AL583832	194569719	2	106993	0	0	106993
S/G/Y/R/B/O	NT_021905	AC018373	194875070	1			AL359927	135434473	1	32822	0	0	32822
S/G/Y/R/B/O	NT_021905	AC098936	195032261	1	chr1	NT_021905	AL691515	195184126	1	0	0	0	0
S/G/Y/R/B/O	NT_021905	AC098936	195032261	1	chr1	NT_021905	AC098933	194838111	1	36617	0	22990	59607
S/G/Y/R/B/O	NT_021905	AC098936	195032261	1	chr1	NT_004658	AC099568	88218768	3	10114	1830	332	12276
S/G/Y/R/B/O	NT_021905	AC098936	195032261	1	chr1	NT_021905	AL357131	192259438	1	97161	0	0	97161
S/G/Y/R/B/O	NT_021905	AC098936	195032261	1	chr1	NT_004658	AL391497	88031588	3	15703	16415	8995	41113
S/G/Y/R/B/O	NT_021905	AC098936	195032261	1			AC079091	194569719	1	10243	4617	8163	23023
S/G/Y/R/B/O	NT_021905	AL691515	195184126	1	chr1	NT_021905	AC016539	195339206	1	25835	2854	0	28689
S/G/Y/R/B/O	NT_021905	AL691515	195184126	1	chr1	NT_021905	AL713873	195339212	1	44546	0	0	44546
S/G/Y/R/B/O	NT_021905	AC016539	195339206	1	chr1	NT_021905	AL713873	195339212	1	130229	2848	6914	139991
S/G/Y/R/B/O	NT_021905	AC016539	195339206	1	chr1	NT_021905	AL596326	195481237	2	11766	0	1094	12860
S/G/Y/R/B/O	NT_021905	AC016539	195339206	1			AC048365	195339212	1	13245	0	0	13245
S/G/Y/R/B/O	NT_021905	AL713873	195339212	1	chr1	NT_021905	AL596326	195481237	2	19030	0	0	19030
S/G/Y/R/B/O	NT_021905	AL713873	195339212	1	chr1	NT_021905	AL691515	195184126	1	44546	0	0	44546
S/G/Y/R/B/O	NT_021905	AL713873	195339212	1			AC048365	195339206	1	28920	0	0	28920
S/G/Y/R/B/O	NT_021905	AL596326	195481237	2	chr1	NT_021905	AL513213	195659546	3	0	0	0	0
S/G/Y/R/B/O	NT_021905	AL596326	195481237	2	chr1	NT_021905	AC016539	195339206	1	11766	0	1094	12860
S/G/Y/R/B/O	NT_021905	AL596326	195481237	2			AC048365	195339206	1	155755	1823	0	157578
S/G/Y/R/B/O	NT_021905	AL513213	195659546	3	chr1	NT_021905	AL365207	195661540	3	0	1999	0	1999
S/G/Y/R/B/O	NT_021905	AL365207	195661540	3	chr1	NT_021905	AL356291	195842219	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021905	AL356291	195842219	3	chr1	NT_021905	AL359435	195876212	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021905	AL359435	195876212	3	chr1	NT_021905	AL161796	196031159	3	0	0	0	0
S/G/Y/R/B/O	NT_021905	AL359435	195876212	3			AC040890	195661540	1	101820	5433	0	107253
S/G/Y/R/B/O	NT_021905	AL359435	195876212	3			AL353144	195661540	1	21826	13447	10036	45309
S/G/Y/R/B/O	NT_021905	AL161796	196031159	3	chr1	NT_021905	AL136371	196081298	3	0	0	0	0
S/G/Y/R/B/O	NT_021905	AL161796	196031159	3			AC026892	195842219	1	51828	0	0	51828
S/G/Y/R/B/O	NT_021905	AL161796	196031159	3			AC040890	195842219	1	43465	1821	1033	46319
S/G/Y/R/B/O	NT_021905	AL136371	196081298	3	chr1	NT_021905	AL357974	196227082	3	0	0	0	0
S/G/Y/R/B/O	NT_021905	AL136371	196081298	3			AC026892	195842219	1	81422	0	0	81422
S/G/Y/R/B/O	NT_021905	AL136371	196081298	3			AC040890	195842219	1	14439	0	0	14439
S/G/Y/R/B/O	NT_021905	AL357974	196227082	3	chr1	NT_021905	AL591504	196320144	3	0	1998	0	1998
S/G/Y/R/B/O	NT_021905	AL357974	196227082	3			AC067869	195842219	1	17591	732	0	18323
S/G/Y/R/B/O	NT_021905	AL591504	196320144	3	chr1	NT_021905	AL359976	196468743	3	0	0	0	0
S/G/Y/R/B/O	NT_021905	AL591504	196320144	3	chr1	NT_021905	AC074364	197619574	1	57834	0	20820	78654
S/G/Y/R/B/O	NT_021905	AL591504	196320144	3			AC067869	196320144	1	131055	10753	3470	145278
S/G/Y/R/B/O	NT_021905	AL359976	196468743	3	chr1	NT_021905	AL365402	196505621	3	0	0	0	0
S/G/Y/R/B/O	NT_021905	AL359976	196468743	3	chr1	NT_021905	AC074364	197619574	1	30137	0	0	30137
S/G/Y/R/B/O	NT_021905	AL359976	196468743	3			AC067869	196227082	1	15897	2714	0	18611
S/G/Y/R/B/O	NT_021905	AL365402	196505621	3	chr1	NT_021905	AL354771	196693784	3	0	1998	0	1998
S/G/Y/R/B/O	NT_021905	AL365402	196505621	3	chr1	NT_021905	AC074364	197619574	1	39789	0	7487	47276
S/G/Y/R/B/O	NT_021905	AL365402	196505621	3			AC011631	197619574	3	16572	0	0	16572
S/G/Y/R/B/O	NT_021905	AL354771	196693784	3	chr1	NT_021905	AL391645	196841979	3	0	0	0	0
S/G/Y/R/B/O	NT_021905	AL354771	196693784	3			AC011631	196693784	3	143636	0	0	143636
S/G/Y/R/B/O	NT_021905	AL354771	196693784	3			AC015644	196693784	1	57113	5474	1099	63686
S/G/Y/R/B/O	NT_021905	AL354771	196693784	3			AC073634	196693784	1	100724	0	6101	106825
S/G/Y/R/B/O	NT_021905	AL391645	196841979	3	chr1	NT_021905	AL158838	196975715	3	0	0	0	0
S/G/Y/R/B/O	NT_021905	AL391645	196841979	3			AC015644	196505621	1	39923	1579	4704	46206
S/G/Y/R/B/O	NT_021905	AL391645	196841979	3			AC026654	196505621	1	69468	0	15618	85086
S/G/Y/R/B/O	NT_021905	AL391645	196841979	3			AC073634	196505621	1	43825	0	10800	54625
S/G/Y/R/B/O	NT_021905	AL158838	196975715	3	chr1	NT_021905	AL354725	197144041	3	0	1994	0	1994
S/G/Y/R/B/O	NT_021905	AL158838	196975715	3			AC026654	196505621	1	59893	0	0	59893
S/G/Y/R/B/O	NT_021905	AL354725	197144041	3	chr1	NT_021905	AL139135	197146035	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021905	AL139135	197146035	3	chr1	NT_021905	AL391098	197309954	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021905	AL139135	197146035	3	chr1	NT_021905	AC012581	197613588	1	69326	0	0	69326
S/G/Y/R/B/O	NT_021905	AL391098	197309954	3	chr1	NT_021905	AL138927	197416109	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021905	AL391098	197309954	3	chr1	NT_021905	AC012581	197613588	1	53231	1725	8967	63923
S/G/Y/R/B/O	NT_021905	AL138927	197416109	3	chr1	NT_021905	AC011041	197579276	1	139784	5387	16095	161266
S/G/Y/R/B/O	NT_021905	AC011041	197579276	1	chr1	NT_021905	AC012581	197613588	1	0	0	0	0
S/G/Y/R/B/O	NT_021905	AC012581	197613588	1	chr1	NT_021905	AC074364	197619574	1	0	0	0	0
S/G/Y/R/B/O	NT_021905	AC012581	197613588	1	chr1	NT_021905	AL139135	197146035	3	69326	0	0	69326
S/G/Y/R/B/O	NT_021905	AC012581	197613588	1	chr1	NT_021905	AL391098	197309954	3	53231	1725	8967	63923
S/G/Y/R/B/O	NT_021905	AC074364	197619574	1
S/G/Y/R/B/O	NT_021905	AC074364	197619574	1	chr1	NT_021905	AL359976	196468743	3	30137	0	0	30137
S/G/Y/R/B/O	NT_021905	AC074364	197619574	1	chr1	NT_021905	AL365402	196505621	3	39789	0	7487	47276
S/G/Y/R/B/O	NT_021905	AC074364	197619574	1	chr1	NT_021905	AL591504	196320144	3	57834	0	20820	78654
S/G/Y/R/B/O	NT_021905	AC074364	197619574	1			AC067869	197309954	1	52031	0	2838	54869