Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_004982

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_004982	AC025403	153560742	1	chr1	NT_004982	AL031965	153576384	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AC025403	153560742	1	chr1	NT_004982	AL121986	155577537	3	44404	2645	4372	51421
S/G/Y/R/B/O	NT_004982	AC025403	153560742	1	chr1	NT_004982	AL138899	155443401	3	48186	5564	8806	62556
S/G/Y/R/B/O	NT_004982	AC025403	153560742	1			AB045357	153219266	3	99694	8221	5073	112988
S/G/Y/R/B/O	NT_004982	AC025403	153560742	1			AP002532	155443401	3	123181	8221	6537	137939
S/G/Y/R/B/O	NT_004982	AL031965	153576384	3	chr1	NT_004982	AL031285	153682302	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AL031965	153576384	3			AC078800	155443401	1	11117	1395	0	12512
S/G/Y/R/B/O	NT_004982	AL031285	153682302	3	chr1	NT_004982	Z97200	153808549	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	Z97200	153808549	3	chr1	NT_004982	AL023495	153966998	3	0	0	100	100
S/G/Y/R/B/O	NT_004982	AL023495	153966998	3	chr1	NT_004982	AL162399	153992983	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004982	AL162399	153992983	3	chr1	NT_004982	AL354732	154084622	1	40981	0	0	40981
S/G/Y/R/B/O	NT_004982	AL354732	154084622	1	chr1	NT_004982	AL354699	154200043	1	21793	0	0	21793
S/G/Y/R/B/O	NT_004982	AL354699	154200043	1	chr1	NT_004982	AL445203	154339861	3	58867	0	0	58867
S/G/Y/R/B/O	NT_004982	AL445203	154339861	3	chr1	NT_004982	AL162428	154512304	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004982	AL445203	154339861	3			AL356633	154200043	1	56578	9983	9424	75985
S/G/Y/R/B/O	NT_004982	AL162428	154512304	3	chr1	NT_004982	AL356475	154514298	3	0	2000	0	2000
S/G/Y/R/B/O	NT_004982	AL356475	154514298	3	chr1	NT_004982	AL121714	154620345	3	0	1993	0	1993
S/G/Y/R/B/O	NT_004982	AL356475	154514298	3			AL356633	154512304	1	57235	0	5742	62977
S/G/Y/R/B/O	NT_004982	AL121714	154620345	3	chr1	NT_004982	AL445191	154709122	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AL445191	154709122	3	chr1	NT_004982	AL031297	154712899	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AL031297	154712899	3	chr1	NT_004982	AL021940	154815980	3	0	0	100	100
S/G/Y/R/B/O	NT_004982	AL021940	154815980	3	chr1	NT_004982	AL022146	154957469	3	0	0	100	100
S/G/Y/R/B/O	NT_004982	AL022146	154957469	3	chr1	NT_004982	Z99572	155035394	3	0	0	100	100
S/G/Y/R/B/O	NT_004982	Z99572	155035394	3	chr1	NT_004982	AL021068	155141861	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AL021068	155141861	3	chr1	NT_004982	AC068046	155243435	1	64191	4279	15459	83929
S/G/Y/R/B/O	NT_004982	AL021068	155141861	3	chr1	NT_004982	AL356852	155246539	1	12579	0	8403	20982
S/G/Y/R/B/O	NT_004982	AL021068	155141861	3			AJ238413	155243435	3	23760	0	0	23760
S/G/Y/R/B/O	NT_004982	AC068046	155243435	1	chr1	NT_004982	AL356852	155246539	1	68330	0	11675	80005
S/G/Y/R/B/O	NT_004982	AC068046	155243435	1	chr1	NT_004982	Z99758	155300209	3	23666	0	8292	31958
S/G/Y/R/B/O	NT_004982	AL356852	155246539	1	chr1	NT_004982	Z99758	155300209	3	55581	0	0	55581
S/G/Y/R/B/O	NT_004982	AL356852	155246539	1	chr1	NT_004982	AL021068	155141861	3	12579	0	8403	20982
S/G/Y/R/B/O	NT_004982	Z99758	155300209	3	chr1	NT_004982	AL138899	155443401	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	Z99758	155300209	3	chr1	NT_004982	AC068046	155243435	1	23666	0	8292	31958
S/G/Y/R/B/O	NT_004982	Z99758	155300209	3			AL390855	155246539	1	35426	0	0	35426
S/G/Y/R/B/O	NT_004982	AL138899	155443401	3	chr1	NT_004982	AL121986	155577537	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AL138899	155443401	3	chr1	NT_004982	AC025403	153560742	1	48186	5564	8806	62556
S/G/Y/R/B/O	NT_004982	AL138899	155443401	3			AB045357	155246539	3	80300	0	0	80300
S/G/Y/R/B/O	NT_004982	AL138899	155443401	3			AP002532	154084622	3	80300	0	0	80300
S/G/Y/R/B/O	NT_004982	AL121986	155577537	3	chr1	NT_004982	AL365440	155744271	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AL121986	155577537	3	chr1	NT_004982	AC025403	153560742	1	44404	2645	4372	51421
S/G/Y/R/B/O	NT_004982	AL121986	155577537	3			AB045358	154084622	3	115334	0	0	115334
S/G/Y/R/B/O	NT_004982	AL121986	155577537	3			AP002532	153560742	3	168728	0	0	168728
S/G/Y/R/B/O	NT_004982	AL121986	155577537	3			X14975	153560742	3	10335	0	0	10335
S/G/Y/R/B/O	NT_004982	AL365440	155744271	3	chr1	NT_004982	AL160283	155871125	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AL365440	155744271	3			AB045359	153560742	3	126860	0	0	126860
S/G/Y/R/B/O	NT_004982	AL365440	155744271	3			AC024654	153560742	1	96001	0	23085	119086
S/G/Y/R/B/O	NT_004982	AL365440	155744271	3			AP002532	153560742	3	52617	0	0	52617
S/G/Y/R/B/O	NT_004982	AL160283	155871125	3	chr1	NT_004982	AL353894	155907577	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AL160283	155871125	3			AP002533	153560742	3	38415	0	0	38415
S/G/Y/R/B/O	NT_004982	AL353894	155907577	3	chr1	NT_004982	AL513205	156018247	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AL353894	155907577	3			AB045360	153560742	3	112102	0	0	112102
S/G/Y/R/B/O	NT_004982	AL353894	155907577	3			AC010814	153560742	1	20070	0	0	20070
S/G/Y/R/B/O	NT_004982	AL353894	155907577	3			AP002533	153560742	3	112120	0	0	112120
S/G/Y/R/B/O	NT_004982	AL513205	156018247	3	chr1	NT_004982	AL513208	156197242	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AL513205	156018247	3			AB045361	153560742	3	146897	0	0	146897
S/G/Y/R/B/O	NT_004982	AL513205	156018247	3			AC010814	153560742	1	114527	0	1476	116003
S/G/Y/R/B/O	NT_004982	AL513205	156018247	3			AP002533	153560742	3	80702	0	0	80702
S/G/Y/R/B/O	NT_004982	AL513205	156018247	3			AP002534	153560742	3	99875	0	0	99875
S/G/Y/R/B/O	NT_004982	AL513208	156197242	3	chr1	NT_004982	AL359753	156227058	1	0	1980	0	1980
S/G/Y/R/B/O	NT_004982	AL359753	156227058	1	chr1	NT_004982	AL451134	156405803	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AL359753	156227058	1			AB045363	156227058	3	133890	0	0	133890
S/G/Y/R/B/O	NT_004982	AL359753	156227058	1			AB045364	156227058	3	30812	0	0	30812
S/G/Y/R/B/O	NT_004982	AL359753	156227058	1			AP002534	156197242	3	174253	0	0	174253
S/G/Y/R/B/O	NT_004982	AL451134	156405803	3	chr1	NT_004982	AL035403	156453152	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AL451134	156405803	3			AB045364	156197242	3	49280	0	0	49280
S/G/Y/R/B/O	NT_004982	AL451134	156405803	3			AP002535	156197242	3	49280	0	0	49280
S/G/Y/R/B/O	NT_004982	AL035403	156453152	3	chr1	NT_004982	AL513323	156570099	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AL035403	156453152	3			AP002535	156197242	3	118851	0	0	118851
S/G/Y/R/B/O	NT_004982	AL513323	156570099	3	chr1	NT_004982	AL663023	156736438	2	28309	0	0	28309
S/G/Y/R/B/O	NT_004982	AL513323	156570099	3			AB045365	156197242	3	71277	0	0	71277
S/G/Y/R/B/O	NT_004982	AL513323	156570099	3			AB059236	156197242	3	20593	0	0	20593
S/G/Y/R/B/O	NT_004982	AL513323	156570099	3			AP002535	156736438	3	71277	0	0	71277
S/G/Y/R/B/O	NT_004982	AL663023	156736438	2	chr1	NT_004982	AL606752	156818546	3	34424	0	0	34424
S/G/Y/R/B/O	NT_004982	AL606752	156818546	3	chr1	NT_004982	AL445528	156905680	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004982	AL606752	156818546	3			AC016787	156818546	1	37824	0	15783	53607
S/G/Y/R/B/O	NT_004982	AL606752	156818546	3			AL359843	156818546	1	27499	0	0	27499
S/G/Y/R/B/O	NT_004982	AL445528	156905680	3	chr1	NT_004982	AL590560	157098954	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004982	AL445528	156905680	3			AC016787	156736438	1	98164	4042	0	102206
S/G/Y/R/B/O	NT_004982	AL445528	156905680	3			AF442818	156736438	3	30124	0	0	30124
S/G/Y/R/B/O	NT_004982	AL445528	156905680	3			AL359843	156736438	1	128459	0	0	128459
S/G/Y/R/B/O	NT_004982	AL590560	157098954	3	chr1	NT_004982	AL513485	157235816	3	0	1996	0	1996
S/G/Y/R/B/O	NT_004982	AL513485	157235816	3	chr1	NT_004982	AL513302	157314214	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AL513485	157235816	3			AL357565	157235816	1	76129	0	0	76129
S/G/Y/R/B/O	NT_004982	AL513302	157314214	3	chr1	NT_004982	AL121987	157369151	1	2000	0	0	2000
S/G/Y/R/B/O	NT_004982	AL513302	157314214	3			AL357565	157369151	1	55446	0	0	55446
S/G/Y/R/B/O	NT_004982	AL121987	157369151	1	chr1	NT_004982	AL139011	157535903	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AL121987	157369151	1			AF310646	157369151	3	20756	0	0	20756
S/G/Y/R/B/O	NT_004982	AL121987	157369151	1			AL357565	157369151	1	24747	0	0	24747
S/G/Y/R/B/O	NT_004982	AL121987	157369151	1			AL359981	157369151	1	45437	0	0	45437
S/G/Y/R/B/O	NT_004982	AL139011	157535903	3	chr1	NT_004982	AL513282	157588096	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AL139011	157535903	3			AL359981	157314214	1	52186	0	0	52186
S/G/Y/R/B/O	NT_004982	AL513282	157588096	3	chr1	NT_004982	AL445230	157662833	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004982	AL513282	157588096	3			AL359981	157314214	1	73036	0	0	73036
S/G/Y/R/B/O	NT_004982	AL513282	157588096	3			Y09048	157662833	3	11047	0	0	11047
S/G/Y/R/B/O	NT_004982	AL445230	157662833	3	chr1	NT_004982	AL138930	157763178	3	0	0	0	0
S/G/Y/R/B/O	NT_004982	AL445230	157662833	3			AL138932	157662833	1	77799	4979	8555	91333
S/G/Y/R/B/O	NT_004982	AL138930	157763178	3	chr1	NT_004982	AL121985	157936564	3	0	1995	0	1995
S/G/Y/R/B/O	NT_004982	AL138930	157763178	3	chr4	NT_006098	AC027082	37217278	1	37104	0	2500	39604
S/G/Y/R/B/O	NT_004982	AL138930	157763178	3			AC012471	157588096	1	83385	3794	38314	125493
S/G/Y/R/B/O	NT_004982	AL138930	157763178	3			AL138932	157936564	1	48317	0	6977	55294
S/G/Y/R/B/O	NT_004982	AL138930	157763178	3			AL355996	157936564	1	121333	2786	0	124119
S/G/Y/R/B/O	NT_004982	AL121985	157936564	3	chr1	NT_004982	AC068728	158130543	1	103090	0	0	103090
S/G/Y/R/B/O	NT_004982	AL121985	157936564	3	chr4	NT_006098	AC027082	37217278	1	86275	4428	0	90703
S/G/Y/R/B/O	NT_004982	AL121985	157936564	3			AL159984	157763178	1	12579	9807	4599	26985
S/G/Y/R/B/O	NT_004982	AL121985	157936564	3			AL354714	157763178	1	195975	0	0	195975
S/G/Y/R/B/O	NT_004982	AL121985	157936564	3			AL355996	157763178	1	37711	2414	1742	41867
S/G/Y/R/B/O	NT_004982	AC068728	158130543	1
S/G/Y/R/B/O	NT_004982	AC068728	158130543	1	chr4	NT_006098	AC027082	37217278	1	24819	0	0	24819
S/G/Y/R/B/O	NT_004982	AC068728	158130543	1			AL159984	157936564	1	16319	16413	3947	36679
S/G/Y/R/B/O	NT_004982	AC068728	158130543	1			AL354714	157936564	1	142733	0	18199	160932