Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_004610

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_004610	AL391598	18701844	1	chr1	NT_004610	AL031730	18704344	3	41074	3007	0	44081
S/G/Y/R/B/O	NT_004610	AL391598	18701844	1	chr1	NT_004610	AL358253	18877547	1	49014	10014	0	59028
S/G/Y/R/B/O	NT_004610	AL391598	18701844	1	chr1	NT_004610	AL391883	18753176	3	70063	16788	0	86851
S/G/Y/R/B/O	NT_004610	AL031730	18704344	3	chr1	NT_004610	AL391883	18753176	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004610	AL391883	18753176	3	chr1	NT_004610	AL358253	18877547	1	94498	0	0	94498
S/G/Y/R/B/O	NT_004610	AL391883	18753176	3	chr1	NT_004610	AL391598	18701844	1	70063	16788	0	86851
S/G/Y/R/B/O	NT_004610	AL358253	18877547	1	chr1	NT_004610	AL645485	18975849	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL358253	18877547	1	chr1	NT_004610	AL391598	18701844	1	49014	10014	0	59028
S/G/Y/R/B/O	NT_004610	AL358253	18877547	1			AL360079	18701844	1	87384	7466	2642	97492
S/G/Y/R/B/O	NT_004610	AL645485	18975849	3	chr1	NT_004610	AL158172	19018327	3	0	1990	0	1990
S/G/Y/R/B/O	NT_004610	AL645485	18975849	3			AL360079	19018327	1	25547	9271	0	34818
S/G/Y/R/B/O	NT_004610	AL158172	19018327	3	chr1	NT_004610	Z98257	19115078	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL158172	19018327	3			AL360079	19018327	1	26444	0	0	26444
S/G/Y/R/B/O	NT_004610	Z98257	19115078	3	chr1	NT_004610	AL020998	19250549	3	0	0	104	104
S/G/Y/R/B/O	NT_004610	AL020998	19250549	3	chr1	NT_004610	AL139254	19331212	2	15675	0	0	15675
S/G/Y/R/B/O	NT_004610	AL139254	19331212	2	chr1	NT_004610	AL391357	19460652	3	12964	0	0	12964
S/G/Y/R/B/O	NT_004610	AL139254	19331212	2			AL356300	19250549	1	17693	2181	0	19874
S/G/Y/R/B/O	NT_004610	AL391357	19460652	3	chr1	NT_004610	AL138784	19617691	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL391357	19460652	3			AC022786	19460652	1	54725	6476	1137	62338
S/G/Y/R/B/O	NT_004610	AL391357	19460652	3			AC025224	19460652	1	57928	5266	47692	110886
S/G/Y/R/B/O	NT_004610	AL391357	19460652	3			AL356300	19331212	1	68944	0	3624	72568
S/G/Y/R/B/O	NT_004610	AL391357	19460652	3			AL365439	19331212	2	86612	0	0	86612
S/G/Y/R/B/O	NT_004610	AL138784	19617691	3	chr1	NT_004610	AL606477	19768125	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL138784	19617691	3			AC022786	19331212	1	78790	11598	15806	106194
S/G/Y/R/B/O	NT_004610	AL138784	19617691	3			AL353647	19331212	1	151136	0	0	151136
S/G/Y/R/B/O	NT_004610	AL138784	19617691	3			AL365439	19331212	2	93564	0	0	93564
S/G/Y/R/B/O	NT_004610	AL138784	19617691	3			AL663074	19331212	1	135960	0	0	135960
S/G/Y/R/B/O	NT_004610	AL606477	19768125	3	chr1	NT_004610	AL358392	19864517	2	106802	0	0	106802
S/G/Y/R/B/O	NT_004610	AL606477	19768125	3			AL663074	19864517	1	48500	0	0	48500
S/G/Y/R/B/O	NT_004610	AL358392	19864517	2	chr1	NT_004610	AL627311	19940758	1	15167	0	0	15167
S/G/Y/R/B/O	NT_004610	AL358392	19864517	2			AL663074	19940758	1	15872	0	0	15872
S/G/Y/R/B/O	NT_004610	AL627311	19940758	1	chr1	NT_004610	AL672037	20105930	3	0	1995	0	1995
S/G/Y/R/B/O	NT_004610	AL672037	20105930	3	chr1	NT_004610	AL031005	20143504	3	0	1996	0	1996
S/G/Y/R/B/O	NT_004610	AL031005	20143504	3	chr1	NT_004610	AL031728	20251412	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL031005	20143504	3	chr1	NT_004610	AC068751	20357313	1	39058	0	0	39058
S/G/Y/R/B/O	NT_004610	AL031005	20143504	3	chr1	NT_004610	AL365182	20325349	1	46861	0	0	46861
S/G/Y/R/B/O	NT_004610	AL031728	20251412	3	chr1	NT_004610	AL365182	20325349	1	7368	0	46419	53787
S/G/Y/R/B/O	NT_004610	AL031728	20251412	3	chr1	NT_004610	AC068751	20357313	1	35564	0	13122	48686
S/G/Y/R/B/O	NT_004610	AL365182	20325349	1	chr1	NT_004610	AC068751	20357313	1	98711	2138	30743	131592
S/G/Y/R/B/O	NT_004610	AL365182	20325349	1	chr1	NT_004610	AL031005	20143504	3	46861	0	0	46861
S/G/Y/R/B/O	NT_004610	AC068751	20357313	1	chr1	NT_004610	AL592309	20399718	2	0	0	0	0
S/G/Y/R/B/O	NT_004610	AC068751	20357313	1	chr1	NT_004610	AL031005	20143504	3	39058	0	0	39058
S/G/Y/R/B/O	NT_004610	AC068751	20357313	1	chr1	NT_004610	AL031728	20251412	3	35564	0	13122	48686
S/G/Y/R/B/O	NT_004610	AL592309	20399718	2	chr1	NT_004610	AL359815	20563664	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL592309	20399718	2			AC026565	20325349	1	176158	19435	1451	197044
S/G/Y/R/B/O	NT_004610	AL592309	20399718	2			AL357252	20325349	2	94661	0	0	94661
S/G/Y/R/B/O	NT_004610	AL592309	20399718	2			AL391000	20325349	1	63294	5016	3919	72229
S/G/Y/R/B/O	NT_004610	AL592309	20399718	2			AL391068	20325349	1	104956	6461	0	111417
S/G/Y/R/B/O	NT_004610	AL359815	20563664	3	chr1	NT_004610	AL590103	20713286	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004610	AL359815	20563664	3			AC023093	20325349	1	109641	9698	16086	135425
S/G/Y/R/B/O	NT_004610	AL359815	20563664	3			AC026565	20325349	1	35241	0	0	35241
S/G/Y/R/B/O	NT_004610	AL359815	20563664	3			AL357252	20325349	2	98498	0	0	98498
S/G/Y/R/B/O	NT_004610	AL590103	20713286	3	chr1	NT_004610	AL590556	20886448	2	25724	0	0	25724
S/G/Y/R/B/O	NT_004610	AL590103	20713286	3			AC020565	20713286	1	99864	6833	23650	130347
S/G/Y/R/B/O	NT_004610	AL590103	20713286	3			AC023093	20713286	1	27357	2709	1259	31325
S/G/Y/R/B/O	NT_004610	AL590556	20886448	2	chr1	NT_004610	AL031281	21000134	3	73563	0	0	73563
S/G/Y/R/B/O	NT_004610	AL590556	20886448	2			AC020565	20886448	1	36110	2779	0	38889
S/G/Y/R/B/O	NT_004610	AL031281	21000134	3	chr1	NT_004610	AL445253	21129500	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004610	AL445253	21129500	3	chr1	NT_004610	AL031279	21144929	3	0	1995	0	1995
S/G/Y/R/B/O	NT_004610	AL031279	21144929	3	chr1	NT_004610	AL591122	21278557	1	82637	0	0	82637
S/G/Y/R/B/O	NT_004610	AL591122	21278557	1	chr1	NT_004610	AL358788	21380975	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004610	AL358788	21380975	3	chr1	NT_004610	AL035703	21457957	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004610	AL035703	21457957	3	chr1	NT_004610	AL158086	21616654	1	21740	0	0	21740
S/G/Y/R/B/O	NT_004610	AL035703	21457957	3			AC025929	21278557	1	122109	3701	4386	130196
S/G/Y/R/B/O	NT_004610	AL158086	21616654	1	chr1	NT_004610	AL611946	21697017	1	64315	2183	0	66498
S/G/Y/R/B/O	NT_004610	AL158086	21616654	1			AC013611	21380975	1	42934	0	3544	46478
S/G/Y/R/B/O	NT_004610	AL158086	21616654	1			AC025929	21380975	1	64791	1946	0	66737
S/G/Y/R/B/O	NT_004610	AL611946	21697017	1	chr1	NT_004610	AL512444	21742688	3	63323	0	0	63323
S/G/Y/R/B/O	NT_004610	AL611946	21697017	1			AC013611	21697017	1	118207	2963	20995	142165
S/G/Y/R/B/O	NT_004610	AL611946	21697017	1			AC025929	21697017	1	17699	2177	0	19876
S/G/Y/R/B/O	NT_004610	AL512444	21742688	3	chr1	NT_004610	AL035704	21869277	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL512444	21742688	3			AC013611	21742688	1	60884	2316	0	63200
S/G/Y/R/B/O	NT_004610	AL512444	21742688	3			AC067727	21742688	1	15500	0	0	15500
S/G/Y/R/B/O	NT_004610	AL035704	21869277	3	chr1	NT_004610	AL355534	21981231	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL035704	21869277	3	chr1	NT_004610	AC068311	22224846	1	19461	14074	10551	44086
S/G/Y/R/B/O	NT_004610	AL035704	21869277	3			AC067727	21697017	1	77415	0	7515	84930
S/G/Y/R/B/O	NT_004610	AL035704	21869277	3			AL157403	22224846	1	75746	5727	17696	99169
S/G/Y/R/B/O	NT_004610	AL355534	21981231	3	chr1	NT_004610	AL031428	21998717	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL355534	21981231	3	chr1	NT_004610	AC068311	22224846	1	10387	0	1139	11526
S/G/Y/R/B/O	NT_004610	AL355534	21981231	3			AC067727	22224846	1	16828	0	0	16828
S/G/Y/R/B/O	NT_004610	AL031428	21998717	3	chr1	NT_004610	AL161672	22099568	3	0	0	100	100
S/G/Y/R/B/O	NT_004610	AL031428	21998717	3	chr1	NT_004610	AC068311	22224846	1	15810	27488	14857	58155
S/G/Y/R/B/O	NT_004610	AL161672	22099568	3	chr1	NT_004610	AL049576	22133987	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL049576	22133987	3	chr1	NT_004610	AL353585	22200426	3	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL049576	22133987	3			AL445206	21998717	1	30297	0	14597	44894
S/G/Y/R/B/O	NT_004610	AL353585	22200426	3	chr1	NT_004610	AC068311	22224846	1	0	0	0	0
S/G/Y/R/B/O	NT_004610	AL353585	22200426	3			AL445206	21998717	1	23760	0	0	23760
S/G/Y/R/B/O	NT_004610	AC068311	22224846	1
S/G/Y/R/B/O	NT_004610	AC068311	22224846	1	chr1	NT_004610	AL031428	21998717	3	15810	27488	14857	58155
S/G/Y/R/B/O	NT_004610	AC068311	22224846	1	chr1	NT_004610	AL035704	21869277	3	19461	14074	10551	44086
S/G/Y/R/B/O	NT_004610	AC068311	22224846	1	chr1	NT_004610	AL355534	21981231	3	10387	0	1139	11526