Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_004873

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_004873	AL603890	12289114	3	chr1	NT_004873	AL603749	12377920	3	0	0	0	0
S/G/Y/R/B/O	NT_004873	AL603890	12289114	3			AL365443	11871331	1	19987	0	0	19987
S/G/Y/R/B/O	NT_004873	AL603749	12377920	3	chr1	NT_004873	AL354712	12478233	3	0	0	0	0
S/G/Y/R/B/O	NT_004873	AL603749	12377920	3			AC019262	11871331	1	19699	0	734	20433
S/G/Y/R/B/O	NT_004873	AL603749	12377920	3			AL365443	11871331	1	57557	2372	0	59929
S/G/Y/R/B/O	NT_004873	AL603749	12377920	3			AL451066	11871331	1	29225	0	16107	45332
S/G/Y/R/B/O	NT_004873	AL354712	12478233	3	chr1	NT_004873	AL359771	12599521	3	0	0	0	0
S/G/Y/R/B/O	NT_004873	AL354712	12478233	3			AC019262	11871331	1	90722	0	5038	95760
S/G/Y/R/B/O	NT_004873	AL354712	12478233	3			AL451066	11871331	1	80895	0	12732	93627
S/G/Y/R/B/O	NT_004873	AL359771	12599521	3	chr1	NT_004873	AL583942	12708640	3	0	1996	0	1996
S/G/Y/R/B/O	NT_004873	AL359771	12599521	3			AL357492	11871331	1	24200	11346	13815	49361
S/G/Y/R/B/O	NT_004873	AL583942	12708640	3	chr1	NT_004873	AL031277	12713825	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004873	AL031277	12713825	3	chr1	NT_004873	AL031273	12863014	3	0	0	0	0
S/G/Y/R/B/O	NT_004873	AL031277	12713825	3			AC074234	12599521	1	65495	3550	39910	108955
S/G/Y/R/B/O	NT_004873	AL031273	12863014	3	chr1	NT_004873	AL033525	12919873	3	0	0	0	0
S/G/Y/R/B/O	NT_004873	AL031273	12863014	3			AC074234	12708640	1	34660	0	12874	47534
S/G/Y/R/B/O	NT_004873	AL033525	12919873	3	chr1	NT_004873	Z99291	13084674	3	0	0	0	0
S/G/Y/R/B/O	NT_004873	Z99291	13084674	3	chr1	NT_004873	AL357873	13181182	3	0	1997	0	1997
S/G/Y/R/B/O	NT_004873	Z99291	13084674	3			AL359086	13181182	1	53748	0	0	53748
S/G/Y/R/B/O	NT_004873	AL357873	13181182	3	chr1	NT_004873	AL359873	13322690	3	0	1996	0	1996
S/G/Y/R/B/O	NT_004873	AL357873	13181182	3			AL359086	13181182	1	49689	0	0	49689
S/G/Y/R/B/O	NT_004873	AL359873	13322690	3	chr1	NT_004873	AL161427	13407435	3	0	0	100	100
S/G/Y/R/B/O	NT_004873	AL161427	13407435	3	chr1	NT_004873	AL358793	13484525	3	0	1996	0	1996
S/G/Y/R/B/O	NT_004873	AL358793	13484525	3	chr1	NT_004873	AL034395	13574959	3	0	1992	0	1992
S/G/Y/R/B/O	NT_004873	AL034395	13574959	3	chr1	NT_004873	AL031732	13683616	3	0	0	100	100
S/G/Y/R/B/O	NT_004873	AL031732	13683616	3	chr1	NT_004873	AL031293	13752533	3	0	0	100	100
S/G/Y/R/B/O	NT_004873	AL031293	13752533	3	chr1	NT_004873	AL445263	13858451	3	0	0	100	100
S/G/Y/R/B/O	NT_004873	AL031293	13752533	3			AL391866	13683616	1	83831	0	0	83831
S/G/Y/R/B/O	NT_004873	AL445263	13858451	3	chr1	NT_004873	AL391215	13916873	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004873	AL445263	13858451	3			AL391866	13916873	1	36765	0	0	36765
S/G/Y/R/B/O	NT_004873	AL391215	13916873	3	chr1	NT_004873	AL035405	14035424	3	0	0	0	0
S/G/Y/R/B/O	NT_004873	AL391215	13916873	3			AC055792	13916873	1	96669	0	9921	106590
S/G/Y/R/B/O	NT_004873	AL035405	14035424	3	chr1	NT_004873	AL391094	14202357	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004873	AL035405	14035424	3			AC055792	13858451	1	46659	4489	17167	68315
S/G/Y/R/B/O	NT_004873	AL391094	14202357	3	chr1	NT_004873	AL158174	14246027	3	0	0	1980	1980
S/G/Y/R/B/O	NT_004873	AL158174	14246027	3	chr1	NT_004873	AL031283	14275137	3	0	1996	0	1996
S/G/Y/R/B/O	NT_004873	AL031283	14275137	3	chr1	NT_004873	AL512883	14449100	3	0	0	0	0
S/G/Y/R/B/O	NT_004873	AL031283	14275137	3			AC009056	14202357	2	20387	2401	0	22788
S/G/Y/R/B/O	NT_004873	AL031283	14275137	3			AL589992	14246027	2	119887	0	0	119887
S/G/Y/R/B/O	NT_004873	AL512883	14449100	3	chr1	NT_004873	AL121992	14528710	3	0	0	0	0
S/G/Y/R/B/O	NT_004873	AL512883	14449100	3			AC009056	14246027	2	78235	2401	25908	106544
S/G/Y/R/B/O	NT_004873	AL512883	14449100	3			AL589992	14246027	2	104308	0	0	104308
S/G/Y/R/B/O	NT_004873	AL121992	14528710	3	chr1	NT_004873	AL606758	14699009	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004873	AL121992	14528710	3			AC009056	14246027	2	55604	0	0	55604
S/G/Y/R/B/O	NT_004873	AL121992	14528710	3			AC058783	14246027	1	10727	0	0	10727
S/G/Y/R/B/O	NT_004873	AL606758	14699009	3	chr1	NT_004873	AL450998	14717550	3	0	0	0	0
S/G/Y/R/B/O	NT_004873	AL450998	14717550	3	chr1	NT_004873	AL034555	14878658	3	0	1997	0	1997
S/G/Y/R/B/O	NT_004873	AL450998	14717550	3			AC058783	14528710	1	40854	0	17494	58348
S/G/Y/R/B/O	NT_004873	AL034555	14878658	3	chr1	NT_004873	AL096775	14963556	3	0	0	0	0
S/G/Y/R/B/O	NT_004873	AL034555	14878658	3			AL355994	14878658	1	52451	0	0	52451
S/G/Y/R/B/O	NT_004873	AL096775	14963556	3	chr1	NT_004873	AL451042	15039697	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004873	AL096775	14963556	3			AL355994	14717550	1	20085	2572	0	22657
S/G/Y/R/B/O	NT_004873	AL451042	15039697	3	chr1	NT_004873	AL109627	15125795	3	0	1994	0	1994
S/G/Y/R/B/O	NT_004873	AL109627	15125795	3	chr1	NT_004873	AL358794	15244613	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004873	AL358794	15244613	3	chr1	NT_004873	AL669962	15367562	3	0	1801	0	1801
S/G/Y/R/B/O	NT_004873	AL669962	15367562	3	chr1	NT_004873	AL137802	15374479	3	0	0	0	0
S/G/Y/R/B/O	NT_004873	AL137802	15374479	3	chr1	NT_004873	AC015618	15460655	1	55451	5022	0	60473
S/G/Y/R/B/O	NT_004873	AL137802	15374479	3	chr1	NT_004873	AL713858	15486651	1	24339	0	23554	47893
S/G/Y/R/B/O	NT_004873	AL137802	15374479	3			AL355800	15460655	1	50170	0	13339	63509
S/G/Y/R/B/O	NT_004873	AC015618	15460655	1	chr1	NT_004873	AL713858	15486651	1	47542	5022	10981	63545
S/G/Y/R/B/O	NT_004873	AC015618	15460655	1	chr1	NT_004873	AL137798	15521955	3	25461	0	7849	33310
S/G/Y/R/B/O	NT_004873	AC015618	15460655	1			AL354666	15374479	1	19970	2240	2981	25191
S/G/Y/R/B/O	NT_004873	AC015618	15460655	1			AL355149	15374479	3	31655	0	1285	32940
S/G/Y/R/B/O	NT_004873	AC015618	15460655	1			AL355800	15374479	1	89014	2396	2910	94320
S/G/Y/R/B/O	NT_004873	AC015618	15460655	1			AL356581	15374479	1	15654	0	7656	23310
S/G/Y/R/B/O	NT_004873	AC015618	15460655	1			AL590643	15374479	1	20465	0	16307	36772
S/G/Y/R/B/O	NT_004873	AL713858	15486651	1	chr1	NT_004873	AL137798	15521955	3	26181	0	12529	38710
S/G/Y/R/B/O	NT_004873	AL713858	15486651	1	chr1	NT_004873	AL137802	15374479	3	24339	0	23554	47893
S/G/Y/R/B/O	NT_004873	AL713858	15486651	1			AL354666	15374479	1	41965	2237	10676	54878
S/G/Y/R/B/O	NT_004873	AL713858	15486651	1			AL355149	15374479	3	37295	0	0	37295
S/G/Y/R/B/O	NT_004873	AL713858	15486651	1			AL355800	15374479	1	86111	0	12524	98635
S/G/Y/R/B/O	NT_004873	AL713858	15486651	1			AL590643	15374479	1	30462	0	9682	40144
S/G/Y/R/B/O	NT_004873	AL137798	15521955	3	chr1	NT_004873	AL021920	15668096	3	31160	0	0	31160
S/G/Y/R/B/O	NT_004873	AL137798	15521955	3	chr1	NT_004873	AC015618	15460655	1	25461	0	7849	33310
S/G/Y/R/B/O	NT_004873	AL137798	15521955	3	chr1	NT_004873	AC021338	15755097	1	42048	7184	6683	55915
S/G/Y/R/B/O	NT_004873	AL137798	15521955	3			AL162261	15668096	1	22239	0	0	22239
S/G/Y/R/B/O	NT_004873	AL137798	15521955	3			AL354666	15668096	1	52531	0	17549	70080
S/G/Y/R/B/O	NT_004873	AL137798	15521955	3			AL355800	15668096	1	56450	2433	0	58883
S/G/Y/R/B/O	NT_004873	AL137798	15521955	3			AL590643	15668096	1	67547	0	17000	84547
S/G/Y/R/B/O	NT_004873	AL021920	15668096	3	chr1	NT_004873	AC021338	15755097	1	85503	14745	6680	106928
S/G/Y/R/B/O	NT_004873	AL021920	15668096	3	chr1	NT_030561	AC064796	231733904	1	11622	0	3785	15407
S/G/Y/R/B/O	NT_004873	AL021920	15668096	3			AL162261	15521955	1	17737	0	0	17737
S/G/Y/R/B/O	NT_004873	AL021920	15668096	3			AL356581	15521955	1	16369	2616	4453	23438
S/G/Y/R/B/O	NT_004873	AL021920	15668096	3			AL391832	15521955	1	13331	0	0	13331
S/G/Y/R/B/O	NT_004873	AL021920	15668096	3			AL392186	15521955	1	12350	4187	19454	35991
S/G/Y/R/B/O	NT_004873	AL021920	15668096	3			AL592290	15521955	1	18636	0	0	18636
S/G/Y/R/B/O	NT_004873	AC021338	15755097	1
S/G/Y/R/B/O	NT_004873	AC021338	15755097	1	chr1	NT_004873	AL137798	15521955	3	42048	7184	6683	55915
S/G/Y/R/B/O	NT_004873	AC021338	15755097	1	chr1	NT_030561	AL360294	231622014	3	20513	2437	2342	25292
S/G/Y/R/B/O	NT_004873	AC021338	15755097	1			AL162261	15521955	1	17654	4235	17725	39614
S/G/Y/R/B/O	NT_004873	AC021338	15755097	1			AL391832	231622014	1	13167	0	0	13167
S/G/Y/R/B/O	NT_004873	AC021338	15755097	1			AL392186	231622014	1	23323	2016	5403	30742