Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_028054

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_028054	AL683812	5169910	1	chr1	NT_028054	Z97635	5201425	3	80354	2269	0	82623
S/G/Y/R/B/O	NT_028054	AL683812	5169910	1	chr1	NT_028054	AL512330	6624376	3	42463	0	753	43216
S/G/Y/R/B/O	NT_028054	AL683812	5169910	1			AL391218	5003682	1	27691	2397	0	30088
S/G/Y/R/B/O	NT_028054	Z97635	5201425	3	chr1	NT_028054	Z98052	5288525	3	0	0	0	0
S/G/Y/R/B/O	NT_028054	Z98052	5288525	3	chr1	NT_028054	Z97987	5400892	3	0	0	100	100
S/G/Y/R/B/O	NT_028054	Z97987	5400892	3	chr1	NT_028054	AL365194	5555968	3	0	0	0	0
S/G/Y/R/B/O	NT_028054	Z97987	5400892	3			AL034378	5679927	1	57393	0	57613	115006
S/G/Y/R/B/O	NT_028054	AL365194	5555968	3	chr1	NT_028054	AL157716	5619616	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028054	AL365194	5555968	3	chr1	NT_028054	AC073482	5679927	1	21312	2751	38280	62343
S/G/Y/R/B/O	NT_028054	AL157716	5619616	3	chr1	NT_028054	AC073482	5679927	1	25082	0	28344	53426
S/G/Y/R/B/O	NT_028054	AC073482	5679927	1	chr1	NT_028054	AL596210	5686091	1	21476	2032	30427	53935
S/G/Y/R/B/O	NT_028054	AC073482	5679927	1	chr1	NT_028054	AL365194	5555968	3	21312	2751	38280	62343
S/G/Y/R/B/O	NT_028054	AL596210	5686091	1	chr1	NT_028054	Z98884	5848119	3	0	0	0	0
S/G/Y/R/B/O	NT_028054	Z98884	5848119	3	chr1	NT_028054	AL009183	6010846	3	0	0	100	100
S/G/Y/R/B/O	NT_028054	Z98884	5848119	3			AC025220	5619616	1	88153	0	2756	90909
S/G/Y/R/B/O	NT_028054	Z98884	5848119	3			AL359881	6010846	1	137913	0	0	137913
S/G/Y/R/B/O	NT_028054	Z98884	5848119	3			AL365441	6010846	1	63016	0	79186	142202
S/G/Y/R/B/O	NT_028054	AL009183	6010846	3	chr1	NT_028054	AL034417	6076594	3	0	0	0	0
S/G/Y/R/B/O	NT_028054	AL009183	6010846	3	chr1	NT_028054	AC025225	6198773	1	25130	9757	1182	36069
S/G/Y/R/B/O	NT_028054	AL009183	6010846	3			AC025220	6010846	1	35354	12154	2546	50054
S/G/Y/R/B/O	NT_028054	AL009183	6010846	3			AL365441	6198773	1	18949	0	29831	48780
S/G/Y/R/B/O	NT_028054	AL009183	6010846	3			AL512402	6198773	1	64670	0	0	64670
S/G/Y/R/B/O	NT_028054	AL034417	6076594	3	chr1	NT_028054	AC025225	6198773	1	54293	10140	26694	91127
S/G/Y/R/B/O	NT_028054	AL034417	6076594	3	chr1	NT_028054	AL672201	6199635	1	92944	0	0	92944
S/G/Y/R/B/O	NT_028054	AL034417	6076594	3			AC025220	5848119	1	14248	4329	9670	28247
S/G/Y/R/B/O	NT_028054	AL034417	6076594	3			AL512402	6198773	1	122248	2008	0	124256
S/G/Y/R/B/O	NT_028054	AC025225	6198773	1	chr1	NT_028054	AL672201	6199635	1	45956	2753	29133	77842
S/G/Y/R/B/O	NT_028054	AC025225	6198773	1	chr1	NT_028054	AL009183	6010846	3	25130	9757	1182	36069
S/G/Y/R/B/O	NT_028054	AC025225	6198773	1			AC025220	6199635	1	13117	13488	1367	27972
S/G/Y/R/B/O	NT_028054	AC025225	6198773	1			AL512402	6076594	1	83215	19912	14581	117708
S/G/Y/R/B/O	NT_028054	AL672201	6199635	1	chr1	NT_028054	AC020552	6272121	3	31588	0	4789	36377
S/G/Y/R/B/O	NT_028054	AL672201	6199635	1	chr1	NT_028054	AL034417	6076594	3	92944	0	0	92944
S/G/Y/R/B/O	NT_028054	AL672201	6199635	1			AL358876	6076594	3	31588	0	4789	36377
S/G/Y/R/B/O	NT_028054	AL672201	6199635	1			AL512402	6076594	1	79804	0	13583	93387
S/G/Y/R/B/O	NT_028054	AC020552	6272121	3	chr1	NT_028054	AL356072	6419242	3	12734	0	0	12734
S/G/Y/R/B/O	NT_028054	AC020552	6272121	3			AC024508	6528811	1	46092	9208	18724	74024
S/G/Y/R/B/O	NT_028054	AC020552	6272121	3			AL358876	6419242	3	167321	0	0	167321
S/G/Y/R/B/O	NT_028054	AL356072	6419242	3	chr1	NT_028054	AC016049	6528811	1	89799	3988	409	94196
S/G/Y/R/B/O	NT_028054	AL356072	6419242	3			AC024508	6272121	1	51231	6917	4573	62721
S/G/Y/R/B/O	NT_028054	AL356072	6419242	3			AC034143	6272121	1	81218	3660	12803	97681
S/G/Y/R/B/O	NT_028054	AC016049	6528811	1	chr1	NT_028054	AL096855	6535009	1	55213	0	0	55213
S/G/Y/R/B/O	NT_028054	AC016049	6528811	1			AC024508	6272121	1	37682	8541	22495	68718
S/G/Y/R/B/O	NT_028054	AC016049	6528811	1			AC034143	6272121	1	78525	3659	25016	107200
S/G/Y/R/B/O	NT_028054	AC016049	6528811	1			AC079745	5394937	1	27222	6721	47015	80958
S/G/Y/R/B/O	NT_028054	AL096855	6535009	1	chr1	NT_028054	AL512330	6624376	3	0	0	0	0
S/G/Y/R/B/O	NT_028054	AL096855	6535009	1			AC034143	8024707	1	36485	0	21344	57829
S/G/Y/R/B/O	NT_028054	AL096855	6535009	1			AC079745	8024707	1	26923	5822	15165	47910
S/G/Y/R/B/O	NT_028054	AL512330	6624376	3	chr1	NT_028054	AL590128	6683881	2	2000	0	0	2000
S/G/Y/R/B/O	NT_028054	AL512330	6624376	3	chr1	NT_028054	AL683812	5169910	1	42463	0	753	43216
S/G/Y/R/B/O	NT_028054	AL512330	6624376	3			AL391218	8024707	1	50618	2398	0	53016
S/G/Y/R/B/O	NT_028054	AL590128	6683881	2	chr1	NT_028054	AL591163	6836696	2	51118	0	0	51118
S/G/Y/R/B/O	NT_028054	AL590128	6683881	2			AL391218	225376067	1	99165	5293	10122	114580
S/G/Y/R/B/O	NT_028054	AL591163	6836696	2	chr1	NT_028054	AL159177	6955882	3	9901	0	0	9901
S/G/Y/R/B/O	NT_028054	AL591163	6836696	2			AC062024	225376067	1	16968	0	1757	18725
S/G/Y/R/B/O	NT_028054	AL591163	6836696	2			AC108123	225376067	1	64266	2732	17800	84798
S/G/Y/R/B/O	NT_028054	AL159177	6955882	3	chr1	NT_028054	AL031447	6963794	3	0	0	0	0
S/G/Y/R/B/O	NT_028054	AL031447	6963794	3	chr1	NT_028054	AL591866	7059329	3	16622	0	0	16622
S/G/Y/R/B/O	NT_028054	AL031447	6963794	3			AC062024	6836696	1	82830	1547	5449	89826
S/G/Y/R/B/O	NT_028054	AL031447	6963794	3			AC108123	6836696	1	23321	0	44492	67813
S/G/Y/R/B/O	NT_028054	AL591866	7059329	3	chr1	NT_028054	AL158217	7161868	1	0	1997	0	1997
S/G/Y/R/B/O	NT_028054	AL591866	7059329	3			AC062024	7059329	1	56303	8423	6554	71280
S/G/Y/R/B/O	NT_028054	AL591866	7059329	3			AC108123	7059329	1	30602	0	1808	32410
S/G/Y/R/B/O	NT_028054	AL158217	7161868	1	chr1	NT_028054	AL031848	7212165	3	53982	0	0	53982
S/G/Y/R/B/O	NT_028054	AL031848	7212165	3	chr1	NT_028054	AL031847	7355130	3	0	0	100	100
S/G/Y/R/B/O	NT_028054	AL031847	7355130	3	chr1	NT_028054	AL035406	7521548	3	0	0	0	0
S/G/Y/R/B/O	NT_028054	AL031847	7355130	3			AL356496	7212165	1	51822	8329	16841	76992
S/G/Y/R/B/O	NT_028054	AL031847	7355130	3			AL589792	7212165	1	75169	0	3310	78479
S/G/Y/R/B/O	NT_028054	AL035406	7521548	3	chr1	NT_028054	AL356261	7681199	3	0	0	0	0
S/G/Y/R/B/O	NT_028054	AL035406	7521548	3			AC026968	7212165	1	29528	0	2009	31537
S/G/Y/R/B/O	NT_028054	AL035406	7521548	3			AL589792	7212165	1	51362	2366	0	53728
S/G/Y/R/B/O	NT_028054	AL356261	7681199	3	chr1	NT_028054	AL356693	7781501	1	85656	0	0	85656
S/G/Y/R/B/O	NT_028054	AL356261	7681199	3			AC026968	7212165	1	71100	6223	16695	94018
S/G/Y/R/B/O	NT_028054	AL356693	7781501	1	chr1	NT_028054	AL357713	7930934	3	0	0	0	0
S/G/Y/R/B/O	NT_028054	AL356693	7781501	1			AC026968	7781501	1	98004	10867	16691	125562
S/G/Y/R/B/O	NT_028054	AL357713	7930934	3	chr1	NT_028054	AC026160	8024707	1	45632	0	56597	102229
S/G/Y/R/B/O	NT_028054	AC026160	8024707	1	chr1	NT_028054	AL357552	8044945	1	30413	1664	38634	70711
S/G/Y/R/B/O	NT_028054	AC026160	8024707	1			AC025240	8024707	1	22515	0	0	22515
S/G/Y/R/B/O	NT_028054	AL357552	8044945	1	chr1	NT_028054	AL354930	8176308	3	2000	0	0	2000
S/G/Y/R/B/O	NT_028054	AL357552	8044945	1	chr1	NT_028054	AL139415	8204708	3	11151	0	0	11151
S/G/Y/R/B/O	NT_028054	AL357552	8044945	1			AC025240	7930934	1	54598	0	31392	85990
S/G/Y/R/B/O	NT_028054	AL354930	8176308	3	chr1	NT_028054	AL139415	8204708	3	0	0	0	0
S/G/Y/R/B/O	NT_028054	AL354930	8176308	3			AC025240	8176308	1	27125	0	1200	28325
S/G/Y/R/B/O	NT_028054	AL139415	8204708	3	chr1	NT_028054	AL158048	8344136	1	10277	0	0	10277
S/G/Y/R/B/O	NT_028054	AL139415	8204708	3	chr1	NT_028054	AL357552	8044945	1	11151	0	0	11151
S/G/Y/R/B/O	NT_028054	AL139415	8204708	3			AC025240	8044945	1	60629	0	0	60629
S/G/Y/R/B/O	NT_028054	AL139415	8204708	3			AL356306	8344136	1	28156	5009	5564	38729
S/G/Y/R/B/O	NT_028054	AL158048	8344136	1
S/G/Y/R/B/O	NT_028054	AL158048	8344136	1			AL356306	8204708	1	57950	0	0	57950