Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_004483

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_004483	AL390880	73430905	1	chr1	NT_004483	AC096948	73482774	3	55874	9833	0	65707
S/G/Y/R/B/O	NT_004483	AL390880	73430905	1	chr1	NT_004483	AC114487	76033890	1	21035	0	0	21035
S/G/Y/R/B/O	NT_004483	AC096948	73482774	3	chr1	NT_004483	AC103591	73592787	3	40642	0	0	40642
S/G/Y/R/B/O	NT_004483	AC103591	73592787	3	chr1	NT_004483	AC093118	73704222	3	83659	0	0	83659
S/G/Y/R/B/O	NT_004483	AC103591	73592787	3			AC025209	73430905	1	62882	8823	1221	72926
S/G/Y/R/B/O	NT_004483	AC093118	73704222	3	chr1	NT_004483	AL136459	73761379	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004483	AC093118	73704222	3			AC025209	73482774	1	105412	13739	1221	120372
S/G/Y/R/B/O	NT_004483	AC093118	73704222	3			AL139217	73761379	1	46835	4996	19417	71248
S/G/Y/R/B/O	NT_004483	AL136459	73761379	3	chr1	NT_004483	AC096531	73781217	3	0	1993	0	1993
S/G/Y/R/B/O	NT_004483	AL136459	73761379	3			AL139217	73781217	1	11301	0	4161	15462
S/G/Y/R/B/O	NT_004483	AC096531	73781217	3	chr1	NT_004483	AL158841	73951503	3	58750	0	0	58750
S/G/Y/R/B/O	NT_004483	AC096531	73781217	3			AL139217	73761379	1	21367	6455	0	27822
S/G/Y/R/B/O	NT_004483	AC096531	73781217	3			AL160170	73951503	1	59419	4385	0	63804
S/G/Y/R/B/O	NT_004483	AC096531	73781217	3			AL354714	73951503	1	34042	0	0	34042
S/G/Y/R/B/O	NT_004483	AL158841	73951503	3	chr1	NT_004483	AL136324	74060474	3	15500	0	0	15500
S/G/Y/R/B/O	NT_004483	AL158841	73951503	3			AL160170	74060474	1	101047	9191	19894	130132
S/G/Y/R/B/O	NT_004483	AL158841	73951503	3			AL353737	74060474	1	47774	2710	0	50484
S/G/Y/R/B/O	NT_004483	AL158841	73951503	3			AL354714	74060474	1	122872	10161	2784	135817
S/G/Y/R/B/O	NT_004483	AL136324	74060474	3	chr1	NT_004483	AL672168	74180713	1	46059	0	0	46059
S/G/Y/R/B/O	NT_004483	AL136324	74060474	3			AL353737	73951503	1	48372	0	0	48372
S/G/Y/R/B/O	NT_004483	AL136324	74060474	3			AL354946	73951503	1	49421	0	0	49421
S/G/Y/R/B/O	NT_004483	AL672168	74180713	1	chr1	NT_004483	AC104837	74215602	3	83094	0	0	83094
S/G/Y/R/B/O	NT_004483	AL672168	74180713	1			AL354946	74060474	1	108286	2974	11316	122576
S/G/Y/R/B/O	NT_004483	AC104837	74215602	3	chr1	NT_004483	AC099674	74366867	3	39308	0	0	39308
S/G/Y/R/B/O	NT_004483	AC104837	74215602	3			AL354946	74366867	1	61070	0	3079	64149
S/G/Y/R/B/O	NT_004483	AC099674	74366867	3	chr1	NT_004483	AL596269	74509387	3	0	0	0	0
S/G/Y/R/B/O	NT_004483	AC099674	74366867	3	chr1	NT_004483	AC024326	76861525	1	50403	1480	0	51883
S/G/Y/R/B/O	NT_004483	AL596269	74509387	3	chr1	NT_004483	AC098651	74608814	3	7382	0	0	7382
S/G/Y/R/B/O	NT_004483	AL596269	74509387	3	chr1	NT_004483	AC024326	76861525	1	94999	4449	0	99448
S/G/Y/R/B/O	NT_004483	AC098651	74608814	3	chr1	NT_004483	AC093430	74679915	1	71107	0	0	71107
S/G/Y/R/B/O	NT_004483	AC093430	74679915	1	chr1	NT_004483	AC024013	74708423	1	66528	2172	5175	73875
S/G/Y/R/B/O	NT_004483	AC024013	74708423	1	chr1	NT_004483	AL122000	74759590	3	87018	2928	6766	96712
S/G/Y/R/B/O	NT_004483	AL122000	74759590	3	chr1	NT_004483	AL353651	74880034	3	0	0	0	0
S/G/Y/R/B/O	NT_004483	AL353651	74880034	3	chr1	NT_004483	AL606527	74972075	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004483	AL606527	74972075	3	chr1	NT_004483	AL627106	75150039	3	0	1995	0	1995
S/G/Y/R/B/O	NT_004483	AL606527	74972075	3			AC025495	74972075	1	68179	7338	0	75517
S/G/Y/R/B/O	NT_004483	AL606527	74972075	3			AC093431	74972075	1	163987	0	0	163987
S/G/Y/R/B/O	NT_004483	AL627106	75150039	3	chr1	NT_004483	AL358533	75189283	3	0	0	0	0
S/G/Y/R/B/O	NT_004483	AL627106	75150039	3			AC025495	75150039	1	31437	8214	0	39651
S/G/Y/R/B/O	NT_004483	AL358533	75189283	3	chr1	NT_004483	AL591173	75290673	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004483	AL358533	75189283	3			AC025495	74972075	1	26707	2843	0	29550
S/G/Y/R/B/O	NT_004483	AL591173	75290673	3	chr1	NT_004483	AL360080	75366943	3	0	1974	0	1974
S/G/Y/R/B/O	NT_004483	AL360080	75366943	3	chr1	NT_004483	AC096532	75567118	1	141638	0	0	141638
S/G/Y/R/B/O	NT_004483	AL360080	75366943	3	chr1	NT_004483	AC012528	75590589	1	102764	5287	30569	138620
S/G/Y/R/B/O	NT_004483	AL360080	75366943	3	chr1	NT_032956	AC099671	81409064	1	26940	0	0	26940
S/G/Y/R/B/O	NT_004483	AL360080	75366943	3			AL359383	81409064	1	54452	2667	0	57119
S/G/Y/R/B/O	NT_004483	AC096532	75567118	1	chr1	NT_004483	AC012528	75590589	1	81357	5272	21165	107794
S/G/Y/R/B/O	NT_004483	AC096532	75567118	1	chr1	NT_032956	AC099671	81409064	1	50350	0	0	50350
S/G/Y/R/B/O	NT_004483	AC096532	75567118	1			AL359383	81409064	1	63420	2667	3154	69241
S/G/Y/R/B/O	NT_004483	AC012528	75590589	1	chr1	NT_004483	AC103592	75594321	1	0	0	0	0
S/G/Y/R/B/O	NT_004483	AC012528	75590589	1	chr1	NT_032956	AC099671	81409064	1	35441	0	0	35441
S/G/Y/R/B/O	NT_004483	AC012528	75590589	1	chr1	NT_004483	AL360080	75366943	3	102764	5287	30569	138620
S/G/Y/R/B/O	NT_004483	AC012528	75590589	1			AL359383	81409064	1	55163	0	0	55163
S/G/Y/R/B/O	NT_004483	AC103592	75594321	1	chr1	NT_004483	AC099769	75674358	1	46440	0	0	46440
S/G/Y/R/B/O	NT_004483	AC103592	75594321	1			AC098655	4218657	1	20030	0	0	20030
S/G/Y/R/B/O	NT_004483	AC103592	75594321	1			AL139155	75674358	1	90327	11299	321	101947
S/G/Y/R/B/O	NT_004483	AC103592	75594321	1			AL355983	75674358	1	45203	0	2450	47653
S/G/Y/R/B/O	NT_004483	AC099769	75674358	1	chr1	NT_004483	AC099672	75700080	1	0	0	0	0
S/G/Y/R/B/O	NT_004483	AC099769	75674358	1			AC098655	75705913	1	30982	0	576	31558
S/G/Y/R/B/O	NT_004483	AC099769	75674358	1			AL139155	75594321	1	13731	0	0	13731
S/G/Y/R/B/O	NT_004483	AC099672	75700080	1	chr1	NT_004483	AC012109	75705913	1	50125	4997	348	55470
S/G/Y/R/B/O	NT_004483	AC099672	75700080	1	chr1	NT_004483	AC104458	75813794	3	63025	0	0	63025
S/G/Y/R/B/O	NT_004483	AC099672	75700080	1	chr1	NT_004483	AC105279	75720147	3	85135	2249	349	87733
S/G/Y/R/B/O	NT_004483	AC099672	75700080	1			AC026066	75705913	1	24822	8197	10746	43765
S/G/Y/R/B/O	NT_004483	AC099672	75700080	1			AC098655	75705913	1	36796	2868	0	39664
S/G/Y/R/B/O	NT_004483	AC012109	75705913	1	chr1	NT_004483	AC105279	75720147	3	103054	0	0	103054
S/G/Y/R/B/O	NT_004483	AC012109	75705913	1	chr1	NT_004483	AC104458	75813794	3	34405	0	0	34405
S/G/Y/R/B/O	NT_004483	AC012109	75705913	1			AC026066	75720147	1	29887	11971	0	41858
S/G/Y/R/B/O	NT_004483	AC012109	75705913	1			AC098655	75720147	1	32104	2470	0	34574
S/G/Y/R/B/O	NT_004483	AC105279	75720147	3	chr1	NT_004483	AC104458	75813794	3	0	0	0	0
S/G/Y/R/B/O	NT_004483	AC105279	75720147	3	chr1	NT_004483	AC099672	75700080	1	85135	2249	349	87733
S/G/Y/R/B/O	NT_004483	AC105279	75720147	3			AC098655	75705913	1	21774	2868	0	24642
S/G/Y/R/B/O	NT_004483	AC104458	75813794	3	chr1	NT_004483	AC099060	75943368	1	23084	0	0	23084
S/G/Y/R/B/O	NT_004483	AC104458	75813794	3	chr1	NT_004483	AC012109	75705913	1	34405	0	0	34405
S/G/Y/R/B/O	NT_004483	AC104458	75813794	3	chr1	NT_004483	AC099672	75700080	1	63025	0	0	63025
S/G/Y/R/B/O	NT_004483	AC104458	75813794	3	chr1	NT_004483	AC116315	75987900	1	34740	0	0	34740
S/G/Y/R/B/O	NT_004483	AC104458	75813794	3			AC026066	75705913	1	103672	7667	14404	125743
S/G/Y/R/B/O	NT_004483	AC099060	75943368	1	chr1	NT_004483	AC116315	75987900	1	90924	0	3919	94843
S/G/Y/R/B/O	NT_004483	AC099060	75943368	1	chr1	NT_004483	AC069315	76736569	1	30153	0	2268	32421
S/G/Y/R/B/O	NT_004483	AC099060	75943368	1			AC026066	75987900	1	41710	0	10473	52183
S/G/Y/R/B/O	NT_004483	AC099060	75943368	1			AL354946	75987900	1	50805	0	0	50805
S/G/Y/R/B/O	NT_004483	AC116315	75987900	1	chr1	NT_004483	AC114487	76033890	1	0	0	0	0
S/G/Y/R/B/O	NT_004483	AC116315	75987900	1	chr1	NT_004483	AC104458	75813794	3	34740	0	0	34740
S/G/Y/R/B/O	NT_004483	AC116315	75987900	1			AC026066	75987900	1	18428	0	6204	24632
S/G/Y/R/B/O	NT_004483	AC114487	76033890	1	chr1	NT_004483	AL451087	76195337	1	53698	0	3400	57098
S/G/Y/R/B/O	NT_004483	AC114487	76033890	1	chr1	NT_004483	AL390880	73430905	1	21035	0	0	21035
S/G/Y/R/B/O	NT_004483	AL451087	76195337	1	chr1	NT_004483	AC026073	76249691	1	0	0	0	0
S/G/Y/R/B/O	NT_004483	AL451087	76195337	1	chr1	NT_004483	AC093575	76262427	3	37850	2483	0	40333
S/G/Y/R/B/O	NT_004483	AC026073	76249691	1	chr1	NT_004483	AC093575	76262427	3	101507	0	6091	107598
S/G/Y/R/B/O	NT_004483	AC026073	76249691	1	chr1	NT_004483	AC019136	76578869	1	14037	0	18648	32685
S/G/Y/R/B/O	NT_004483	AC026073	76249691	1	chr1	NT_004483	AC095030	76377577	3	46230	0	38970	85200
S/G/Y/R/B/O	NT_004483	AC093575	76262427	3	chr1	NT_004483	AC095030	76377577	3	43790	0	0	43790
S/G/Y/R/B/O	NT_004483	AC093575	76262427	3	chr1	NT_004483	AL451087	76195337	1	37850	2483	0	40333
S/G/Y/R/B/O	NT_004483	AC095030	76377577	3	chr1	NT_004483	AC093433	76519584	1	0	0	0	0
S/G/Y/R/B/O	NT_004483	AC095030	76377577	3	chr1	NT_004483	AC019136	76578869	1	85013	0	0	85013
S/G/Y/R/B/O	NT_004483	AC095030	76377577	3	chr1	NT_004483	AC026073	76249691	1	46230	0	38970	85200
S/G/Y/R/B/O	NT_004483	AC095030	76377577	3			AL500523	76262427	1	55914	0	0	55914
S/G/Y/R/B/O	NT_004483	AC093433	76519584	1	chr1	NT_004483	AC019136	76578869	1	52435	0	14451	66886
S/G/Y/R/B/O	NT_004483	AC093433	76519584	1	chr1	NT_004483	AC026874	77058857	1	35575	0	20008	55583
S/G/Y/R/B/O	NT_004483	AC093433	76519584	1	chr1	NT_004483	AC073027	77255276	1	116532	19134	0	135666
S/G/Y/R/B/O	NT_004483	AC093433	76519584	1	chr1	NT_004483	AC113935	77061882	1	49509	0	0	49509
S/G/Y/R/B/O	NT_004483	AC093433	76519584	1			AL138797	77061882	1	20774	16301	4130	41205
S/G/Y/R/B/O	NT_004483	AC093433	76519584	1			AL500523	77061882	1	50579	0	13542	64121
S/G/Y/R/B/O	NT_004483	AC019136	76578869	1	chr1	NT_004483	AC026932	76621479	1	0	0	0	0
S/G/Y/R/B/O	NT_004483	AC019136	76578869	1	chr1	NT_004483	AC026073	76249691	1	14037	0	18648	32685
S/G/Y/R/B/O	NT_004483	AC019136	76578869	1	chr1	NT_004483	AC073027	77255276	1	28848	0	0	28848
S/G/Y/R/B/O	NT_004483	AC019136	76578869	1	chr1	NT_004483	AC095030	76377577	3	85013	0	0	85013
S/G/Y/R/B/O	NT_004483	AC019136	76578869	1			AL500523	76377577	1	63957	0	8695	72652
S/G/Y/R/B/O	NT_004483	AC026932	76621479	1	chr1	NT_004483	AC069315	76736569	1	0	11471	27382	38853
S/G/Y/R/B/O	NT_004483	AC026932	76621479	1	chr9	NT_023974	AL159995	30478302	1	38341	3467	1194	43002
S/G/Y/R/B/O	NT_004483	AC026932	76621479	1	chr9	NT_023974	AL353808	30641352	3	40755	1632	1162	43549
S/G/Y/R/B/O	NT_004483	AC026932	76621479	1	chr9	NT_023974	AL354704	30683614	3	47049	0	0	47049
S/G/Y/R/B/O	NT_004483	AC069315	76736569	1	chr1	NT_004483	AC024326	76861525	1	0	0	0	0
S/G/Y/R/B/O	NT_004483	AC069315	76736569	1	chr1	NT_004483	AC096951	76873547	3	72175	0	6936	79111
S/G/Y/R/B/O	NT_004483	AC069315	76736569	1	chr1	NT_004483	AC099060	75943368	1	30153	0	2268	32421
S/G/Y/R/B/O	NT_004483	AC069315	76736569	1	chr1	NT_004483	AL035409	76975504	3	20046	0	4548	24594
S/G/Y/R/B/O	NT_004483	AC069315	76736569	1			AL354946	76975504	1	74728	4206	13508	92442
S/G/Y/R/B/O	NT_004483	AC024326	76861525	1	chr1	NT_004483	AC096951	76873547	3	0	0	0	0
S/G/Y/R/B/O	NT_004483	AC024326	76861525	1	chr1	NT_004483	AC099674	74366867	3	50403	1480	0	51883
S/G/Y/R/B/O	NT_004483	AC024326	76861525	1	chr1	NT_004483	AL596269	74509387	3	94999	4449	0	99448
S/G/Y/R/B/O	NT_004483	AC096951	76873547	3	chr1	NT_004483	AL035409	76975504	3	55429	0	0	55429
S/G/Y/R/B/O	NT_004483	AC096951	76873547	3	chr1	NT_004483	AC069315	76736569	1	72175	0	6936	79111
S/G/Y/R/B/O	NT_004483	AC096951	76873547	3			AL354946	76975504	1	53342	0	0	53342
S/G/Y/R/B/O	NT_004483	AL035409	76975504	3	chr1	NT_004483	AC026874	77058857	1	47466	2946	27317	77729
S/G/Y/R/B/O	NT_004483	AL035409	76975504	3	chr1	NT_004483	AC069315	76736569	1	20046	0	4548	24594
S/G/Y/R/B/O	NT_004483	AL035409	76975504	3	chr1	NT_004483	AC113935	77061882	1	32974	0	0	32974
S/G/Y/R/B/O	NT_004483	AC026874	77058857	1	chr1	NT_004483	AC113935	77061882	1	57029	1651	36490	95170
S/G/Y/R/B/O	NT_004483	AC026874	77058857	1	chr1	NT_004483	AC073027	77255276	1	12446	3268	23043	38757
S/G/Y/R/B/O	NT_004483	AC026874	77058857	1	chr1	NT_004483	AC093433	76519584	1	35575	0	20008	55583
S/G/Y/R/B/O	NT_004483	AC113935	77061882	1	chr1	NT_004483	AC073027	77255276	1	44165	0	453	44618
S/G/Y/R/B/O	NT_004483	AC113935	77061882	1	chr1	NT_004483	AC093433	76519584	1	49509	0	0	49509
S/G/Y/R/B/O	NT_004483	AC113935	77061882	1	chr1	NT_004483	AL035409	76975504	3	32974	0	0	32974
S/G/Y/R/B/O	NT_004483	AC113935	77061882	1			AL138797	76975504	1	13705	2660	0	16365
S/G/Y/R/B/O	NT_004483	AC073027	77255276	1
S/G/Y/R/B/O	NT_004483	AC073027	77255276	1	chr1	NT_004483	AC019136	76578869	1	28848	0	0	28848
S/G/Y/R/B/O	NT_004483	AC073027	77255276	1	chr1	NT_004483	AC026874	77058857	1	12446	3268	23043	38757
S/G/Y/R/B/O	NT_004483	AC073027	77255276	1	chr1	NT_004483	AC093433	76519584	1	116532	19134	0	135666
S/G/Y/R/B/O	NT_004483	AC073027	77255276	1			AL138797	77061882	1	22090	11348	4123	37561
S/G/Y/R/B/O	NT_004483	AC073027	77255276	1			AL500523	77061882	1	22913	8252	0	31165