Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_021979

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_021979	AC104456	92908692	1	chr1	NT_021979	AC104332	92978077	3	0	4418	0	4418
S/G/Y/R/B/O	NT_021979	AC104456	92908692	1			AL354890	92978077	1	11378	0	246	11624
S/G/Y/R/B/O	NT_021979	AC104332	92978077	3	chr1	NT_021979	AL133332	93052397	3	109494	0	0	109494
S/G/Y/R/B/O	NT_021979	AC104332	92978077	3			AC004662	92978077	3	107518	0	0	107518
S/G/Y/R/B/O	NT_021979	AL133332	93052397	3	chr1	NT_021979	AL162740	93204497	3	0	0	0	0
S/G/Y/R/B/O	NT_021979	AL133332	93052397	3			AC004662	93052397	3	119897	0	0	119897
S/G/Y/R/B/O	NT_021979	AL162740	93204497	3	chr1	NT_021979	AL449283	93278004	3	0	1996	0	1996
S/G/Y/R/B/O	NT_021979	AL449283	93278004	3	chr1	NT_021979	AC093577	93328924	3	4906	0	0	4906
S/G/Y/R/B/O	NT_021979	AC093577	93328924	3	chr1	NT_021979	AL117354	93437006	3	64419	0	0	64419
S/G/Y/R/B/O	NT_021979	AC093577	93328924	3			AC022425	93204497	3	92255	0	0	92255
S/G/Y/R/B/O	NT_021979	AC093577	93328924	3			AL512269	93278004	1	45753	0	0	45753
S/G/Y/R/B/O	NT_021979	AL117354	93437006	3	chr1	NT_021979	AL355822	93539376	1	31594	0	0	31594
S/G/Y/R/B/O	NT_021979	AL117354	93437006	3			AL512269	93539376	1	29935	0	71650	101585
S/G/Y/R/B/O	NT_021979	AL355822	93539376	1	chr1	NT_021979	AC095037	93619674	1	0	0	0	0
S/G/Y/R/B/O	NT_021979	AL355822	93539376	1	chr1	NT_021979	AL139421	94004119	3	46487	2316	0	48803
S/G/Y/R/B/O	NT_021979	AL355822	93539376	1			AL512269	94004119	1	73728	0	5263	78991
S/G/Y/R/B/O	NT_021979	AC095037	93619674	1	chr1	NT_021979	AL451010	93680831	1	147221	2420	34946	184587
S/G/Y/R/B/O	NT_021979	AL451010	93680831	1	chr1	NT_021979	AL663109	93813187	3	0	0	0	0
S/G/Y/R/B/O	NT_021979	AL663109	93813187	3	chr1	NT_021979	AC023066	93828461	1	11355	0	1417	12772
S/G/Y/R/B/O	NT_021979	AC023066	93828461	1	chr1	NT_021979	AC104836	93854443	1	112630	0	3794	116424
S/G/Y/R/B/O	NT_021979	AC104836	93854443	1	chr1	NT_021979	AL139421	94004119	3	0	0	0	0
S/G/Y/R/B/O	NT_021979	AL139421	94004119	3	chr1	NT_021979	AL137159	94090615	3	0	0	0	0
S/G/Y/R/B/O	NT_021979	AL139421	94004119	3	chr1	NT_021979	AL355822	93539376	1	46487	2316	0	48803
S/G/Y/R/B/O	NT_021979	AL137159	94090615	3	chr1	NT_021979	AC095034	94195067	3	41558	0	0	41558
S/G/Y/R/B/O	NT_021979	AL137159	94090615	3			AC009719	93539376	1	24815	2338	23703	50856
S/G/Y/R/B/O	NT_021979	AC095034	94195067	3	chr1	NT_021979	AL512651	94227080	3	97231	0	0	97231
S/G/Y/R/B/O	NT_021979	AC095034	94195067	3			AC009719	94195067	1	80998	2351	52909	136258
S/G/Y/R/B/O	NT_021979	AC095034	94195067	3			AC022939	94195067	1	112616	0	0	112616
S/G/Y/R/B/O	NT_021979	AL512651	94227080	3	chr1	NT_021979	AL109613	94327744	3	2001	0	0	2001
S/G/Y/R/B/O	NT_021979	AL512651	94227080	3			AC009719	94227080	1	75109	0	2825	77934
S/G/Y/R/B/O	NT_021979	AL512651	94227080	3			AC022939	94227080	1	81514	0	0	81514
S/G/Y/R/B/O	NT_021979	AL109613	94327744	3	chr1	NT_021979	AC055786	94467761	1	82886	3855	3031	89772
S/G/Y/R/B/O	NT_021979	AL109613	94327744	3	chr1	NT_021979	AL359820	94473242	1	92375	2021	14199	108595
S/G/Y/R/B/O	NT_021979	AL109613	94327744	3			AC022939	94327744	1	42583	2279	0	44862
S/G/Y/R/B/O	NT_021979	AC055786	94467761	1	chr1	NT_021979	AL359820	94473242	1	90258	5710	5330	101298
S/G/Y/R/B/O	NT_021979	AL359820	94473242	1	chr1	NT_021979	AL512488	94524863	3	0	1994	0	1994
S/G/Y/R/B/O	NT_021979	AL359820	94473242	1	chr1	NT_021979	AL109613	94327744	3	92375	2021	14199	108595
S/G/Y/R/B/O	NT_021979	AL512488	94524863	3	chr1	NT_021979	AL049796	94544520	3	0	1995	0	1995
S/G/Y/R/B/O	NT_021979	AL049796	94544520	3	chr1	NT_021979	AL117351	94668343	3	0	0	0	0
S/G/Y/R/B/O	NT_021979	AL117351	94668343	3	chr1	NT_021979	AC105278	94762043	1	11969	0	0	11969
S/G/Y/R/B/O	NT_021979	AC105278	94762043	1	chr1	NT_021979	AC093579	94782922	3	102062	0	0	102062
S/G/Y/R/B/O	NT_021979	AC093579	94782922	3	chr1	NT_021979	AL162735	94939344	3	0	0	388	388
S/G/Y/R/B/O	NT_021979	AL162735	94939344	3	chr1	NT_021979	AC097059	95099491	3	76804	0	0	76804
S/G/Y/R/B/O	NT_021979	AC097059	95099491	3	chr1	NT_021979	AL356604	95179605	1	60210	5941	8312	74463
S/G/Y/R/B/O	NT_021979	AL356604	95179605	1	chr1	NT_021979	AL138758	95275973	3	30813	0	0	30813
S/G/Y/R/B/O	NT_021979	AL356604	95179605	1	chr1	NT_021979	AC093117	95384178	3	13970	0	0	13970
S/G/Y/R/B/O	NT_021979	AL356604	95179605	1			AL139157	95275973	1	90905	1614	6489	99008
S/G/Y/R/B/O	NT_021979	AL138758	95275973	3	chr1	NT_021979	AC093117	95384178	3	86904	0	0	86904
S/G/Y/R/B/O	NT_021979	AL138758	95275973	3			AL139157	95384178	1	17110	0	37780	54890
S/G/Y/R/B/O	NT_021979	AL138758	95275973	3			AL390314	95179605	1	54075	10205	0	64280
S/G/Y/R/B/O	NT_021979	AL138758	95275973	3			J02846	95179605	3	13848	0	0	13848
S/G/Y/R/B/O	NT_021979	AC093117	95384178	3	chr1	NT_021979	AL391555	95497542	3	0	0	0	0
S/G/Y/R/B/O	NT_021979	AC093117	95384178	3	chr1	NT_021979	AL356604	95179605	1	13970	0	0	13970
S/G/Y/R/B/O	NT_021979	AC093117	95384178	3			AC025122	95179605	1	37921	3746	9590	51257
S/G/Y/R/B/O	NT_021979	AC093117	95384178	3			AL139157	95275973	1	17117	2330	0	19447
S/G/Y/R/B/O	NT_021979	AC093117	95384178	3			AL390314	95179605	1	140432	19347	3497	163276
S/G/Y/R/B/O	NT_021979	AC093117	95384178	3			J02846	95179605	3	13851	0	0	13851
S/G/Y/R/B/O	NT_021979	AL391555	95497542	3	chr1	NT_021979	AC093429	95525737	3	0	0	0	0
S/G/Y/R/B/O	NT_021979	AL391555	95497542	3			AC025122	95179605	1	28203	1177	0	29380
S/G/Y/R/B/O	NT_021979	AC093429	95525737	3	chr1	NT_021979	AL359554	95705902	3	83720	0	0	83720
S/G/Y/R/B/O	NT_021979	AC093429	95525737	3			AC025122	95179605	1	100444	2873	2109	105426
S/G/Y/R/B/O	NT_021979	AC093429	95525737	3			AL157708	95728294	1	64949	0	0	64949
S/G/Y/R/B/O	NT_021979	AL359554	95705902	3	chr1	NT_021979	AC105942	95728294	1	31236	0	0	31236
S/G/Y/R/B/O	NT_021979	AL359554	95705902	3			AC025122	95705902	1	10937	0	0	10937
S/G/Y/R/B/O	NT_021979	AL359554	95705902	3			AL157708	95728294	1	62197	0	3026	65223
S/G/Y/R/B/O	NT_021979	AC105942	95728294	1	chr1	NT_021979	AC113934	95840763	1	0	0	0	0
S/G/Y/R/B/O	NT_021979	AC105942	95728294	1			AL157708	95525737	1	53081	2381	0	55462
S/G/Y/R/B/O	NT_021979	AC113934	95840763	1	chr1	NT_021979	AC095033	95848003	1	0	0	0	0
S/G/Y/R/B/O	NT_021979	AC113934	95840763	1	chr1	NT_021979	AC099787	95920720	1	74947	463	10221	85631
S/G/Y/R/B/O	NT_021979	AC113934	95840763	1			AC068766	95705902	1	39628	11344	12720	63692
S/G/Y/R/B/O	NT_021979	AC095033	95848003	1	chr1	NT_021979	AC099787	95920720	1	0	0	0	0
S/G/Y/R/B/O	NT_021979	AC095033	95848003	1	chr1	NT_021979	AC092802	96934633	3	61546	5574	0	67120
S/G/Y/R/B/O	NT_021979	AC095033	95848003	1			AL356152	96934633	1	33902	7113	0	41015
S/G/Y/R/B/O	NT_021979	AC099787	95920720	1	chr1	NT_021979	AC060770	96057188	1	29205	0	0	29205
S/G/Y/R/B/O	NT_021979	AC099787	95920720	1	chr1	NT_021979	AC091608	96090639	3	29940	0	0	29940
S/G/Y/R/B/O	NT_021979	AC099787	95920720	1	chr1	NT_021979	AC113934	95840763	1	74947	463	10221	85631
S/G/Y/R/B/O	NT_021979	AC099787	95920720	1			AC068766	96057188	1	30494	2631	9451	42576
S/G/Y/R/B/O	NT_021979	AC060770	96057188	1	chr1	NT_021979	AC091608	96090639	3	105884	3547	0	109431
S/G/Y/R/B/O	NT_021979	AC060770	96057188	1			AC024432	95840763	1	59905	3545	0	63450
S/G/Y/R/B/O	NT_021979	AC091608	96090639	3	chr1	NT_021979	AL592205	96240579	3	0	0	0	0
S/G/Y/R/B/O	NT_021979	AC091608	96090639	3	chr1	NT_021979	AC099787	95920720	1	29940	0	0	29940
S/G/Y/R/B/O	NT_021979	AC091608	96090639	3			AC024432	95920720	1	108096	0	0	108096
S/G/Y/R/B/O	NT_021979	AC091608	96090639	3			AL590107	95920720	1	79846	0	0	79846
S/G/Y/R/B/O	NT_021979	AL592205	96240579	3	chr1	NT_021979	AL357952	96366403	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021979	AL592205	96240579	3			AC024432	95920720	1	60174	0	0	60174
S/G/Y/R/B/O	NT_021979	AL592205	96240579	3			AC025489	95920720	1	47496	0	0	47496
S/G/Y/R/B/O	NT_021979	AL592205	96240579	3			AL590107	96366403	1	91521	0	0	91521
S/G/Y/R/B/O	NT_021979	AL357952	96366403	3	chr1	NT_021979	AL357150	96409759	3	0	0	0	0
S/G/Y/R/B/O	NT_021979	AL357952	96366403	3			AC025489	96366403	1	40849	0	2261	43110
S/G/Y/R/B/O	NT_021979	AL357150	96409759	3	chr1	NT_021979	AL139347	96597037	3	0	0	100	100
S/G/Y/R/B/O	NT_021979	AL357150	96409759	3			AC025489	96240579	1	55563	0	4577	60140
S/G/Y/R/B/O	NT_021979	AL357150	96409759	3			AC025706	96240579	1	150876	2086	28719	181681
S/G/Y/R/B/O	NT_021979	AL139347	96597037	3	chr1	NT_021979	AL390919	96669047	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021979	AL390919	96669047	3	chr1	NT_021979	AL136325	96671305	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021979	AL136325	96671305	3	chr1	NT_021979	AC092393	96754177	3	50179	0	0	50179
S/G/Y/R/B/O	NT_021979	AC092393	96754177	3	chr1	NT_021979	AC022661	96844702	1	19165	0	0	19165
S/G/Y/R/B/O	NT_021979	AC092393	96754177	3	chr1	NT_021979	AL139018	96851366	1	14900	0	24289	39189
S/G/Y/R/B/O	NT_021979	AC022661	96844702	1	chr1	NT_021979	AL139018	96851366	1	31055	2183	1338	34576
S/G/Y/R/B/O	NT_021979	AC022661	96844702	1	chr1	NT_021979	AC023879	96897869	1	50532	7075	3744	61351
S/G/Y/R/B/O	NT_021979	AC022661	96844702	1	chr1	NT_021979	AL138780	97600708	3	31053	3491	1338	35882
S/G/Y/R/B/O	NT_021979	AC022661	96844702	1	chr1	NT_021979	AL604048	97512167	3	56580	4377	0	60957
S/G/Y/R/B/O	NT_021979	AL139018	96851366	1	chr1	NT_021979	AC023879	96897869	1	30721	3646	1418	35785
S/G/Y/R/B/O	NT_021979	AL139018	96851366	1	chr1	NT_021979	AC092393	96754177	3	14900	0	24289	39189
S/G/Y/R/B/O	NT_021979	AL139018	96851366	1	chr1	NT_021979	AL138780	97600708	3	45259	0	0	45259
S/G/Y/R/B/O	NT_021979	AC023879	96897869	1	chr1	NT_021979	AC092802	96934633	3	0	0	0	0
S/G/Y/R/B/O	NT_021979	AC023879	96897869	1	chr1	NT_021979	AC022661	96844702	1	50532	7075	3744	61351
S/G/Y/R/B/O	NT_021979	AC023879	96897869	1	chr1	NT_021979	AL138780	97600708	3	67429	4365	1418	73212
S/G/Y/R/B/O	NT_021979	AC023879	96897869	1	chr1	NT_021979	AL604047	97683883	3	11149	1723	0	12872
S/G/Y/R/B/O	NT_021979	AC023879	96897869	1	chr1	NT_021979	AL604048	97512167	3	64711	10235	2328	77274
S/G/Y/R/B/O	NT_021979	AC092802	96934633	3	chr1	NT_021979	AL139014	97097964	3	50289	0	0	50289
S/G/Y/R/B/O	NT_021979	AC092802	96934633	3	chr1	NT_021979	AC095033	95848003	1	61546	5574	0	67120
S/G/Y/R/B/O	NT_021979	AC092802	96934633	3			AL356152	97097964	1	129797	5323	0	135120
S/G/Y/R/B/O	NT_021979	AL139014	97097964	3	chr1	NT_021979	AL445218	97148998	3	0	0	100	100
S/G/Y/R/B/O	NT_021979	AL139014	97097964	3			AL356152	107314639	1	51749	4548	0	56297
S/G/Y/R/B/O	NT_021979	AL445218	97148998	3	chr1	NT_021979	AL109756	97193101	3	0	0	100	100
S/G/Y/R/B/O	NT_021979	AL109756	97193101	3	chr1	NT_021979	AL356479	97304492	3	0	0	100	100
S/G/Y/R/B/O	NT_021979	AL356479	97304492	3	chr1	NT_021979	AC096538	97432534	1	104586	0	0	104586
S/G/Y/R/B/O	NT_021979	AL356479	97304492	3			AC078801	97148998	1	33947	0	0	33947
S/G/Y/R/B/O	NT_021979	AL356479	97304492	3			AL354954	97193101	1	24128	0	0	24128
S/G/Y/R/B/O	NT_021979	AC096538	97432534	1	chr1	NT_021979	AL604048	97512167	3	0	0	0	0
S/G/Y/R/B/O	NT_021979	AC096538	97432534	1	chr1	NT_021979	AL683887	98056680	1	32254	7143	0	39397
S/G/Y/R/B/O	NT_021979	AC096538	97432534	1			AC078801	97193101	1	63664	7498	15194	86356
S/G/Y/R/B/O	NT_021979	AC096538	97432534	1			AL354954	97193101	1	64257	10988	0	75245
S/G/Y/R/B/O	NT_021979	AL604048	97512167	3	chr1	NT_021979	AL138780	97600708	3	0	0	0	0
S/G/Y/R/B/O	NT_021979	AL604048	97512167	3	chr1	NT_021979	AC022661	96844702	1	56580	4377	0	60957
S/G/Y/R/B/O	NT_021979	AL604048	97512167	3	chr1	NT_021979	AC023879	96897869	1	64711	10235	2328	77274
S/G/Y/R/B/O	NT_021979	AL138780	97600708	3	chr1	NT_021979	AL604047	97683883	3	0	0	0	0
S/G/Y/R/B/O	NT_021979	AL138780	97600708	3	chr1	NT_021979	AC022661	96844702	1	31053	3491	1338	35882
S/G/Y/R/B/O	NT_021979	AL138780	97600708	3	chr1	NT_021979	AC023879	96897869	1	67429	4365	1418	73212
S/G/Y/R/B/O	NT_021979	AL138780	97600708	3	chr1	NT_021979	AL139018	96851366	1	45259	0	0	45259
S/G/Y/R/B/O	NT_021979	AL138780	97600708	3			AL136227	96897869	1	10365	0	5700	16065
S/G/Y/R/B/O	NT_021979	AL604047	97683883	3	chr1	NT_021979	AL390121	97711322	3	0	0	0	0
S/G/Y/R/B/O	NT_021979	AL604047	97683883	3	chr1	NT_021979	AC023879	96897869	1	11149	1723	0	12872
S/G/Y/R/B/O	NT_021979	AL604047	97683883	3			AC069112	96897869	1	14813	0	491	15304
S/G/Y/R/B/O	NT_021979	AL390121	97711322	3	chr1	NT_021979	AC099566	97861711	1	69699	0	0	69699
S/G/Y/R/B/O	NT_021979	AL390121	97711322	3	chr1	NT_021979	AC021191	97890925	1	88766	3989	5062	97817
S/G/Y/R/B/O	NT_021979	AL390121	97711322	3			AC004137	96897869	3	82384	0	0	82384
S/G/Y/R/B/O	NT_021979	AL390121	97711322	3			AC069112	97890925	1	120387	4869	0	125256
S/G/Y/R/B/O	NT_021979	AC099566	97861711	1	chr1	NT_021979	AC021191	97890925	1	69776	3169	25484	98429
S/G/Y/R/B/O	NT_021979	AC099566	97861711	1	chr1	NT_021979	AC092812	97895777	3	26319	0	0	26319
S/G/Y/R/B/O	NT_021979	AC099566	97861711	1			AC004137	97861711	3	63252	0	0	63252
S/G/Y/R/B/O	NT_021979	AC099566	97861711	1			AC069112	97890925	1	38462	0	0	38462
S/G/Y/R/B/O	NT_021979	AC021191	97890925	1	chr1	NT_021979	AC092812	97895777	3	26341	0	6874	33215
S/G/Y/R/B/O	NT_021979	AC021191	97890925	1	chr1	NT_021979	AL390121	97711322	3	88766	3989	5062	97817
S/G/Y/R/B/O	NT_021979	AC021191	97890925	1			AC004137	97711322	3	60006	3989	5301	69296
S/G/Y/R/B/O	NT_021979	AC021191	97890925	1			AC069112	97711322	1	18169	0	5089	23258
S/G/Y/R/B/O	NT_021979	AC092812	97895777	3	chr1	NT_021979	AL683887	98056680	1	12969	2520	0	15489
S/G/Y/R/B/O	NT_021979	AC092812	97895777	3	chr1	NT_021979	AC099566	97861711	1	26319	0	0	26319
S/G/Y/R/B/O	NT_021979	AL683887	98056680	1
S/G/Y/R/B/O	NT_021979	AL683887	98056680	1	chr1	NT_021979	AC096538	97432534	1	32254	7143	0	39397
S/G/Y/R/B/O	NT_021979	AL683887	98056680	1			AC078801	98056680	1	11765	4665	3127	19557
S/G/Y/R/B/O	NT_021979	AL683887	98056680	1			AL354954	97432534	1	30248	14583	0	44831