Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_004434

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_004434	AL356957	140212134	3	chr1	NT_004434	AC027181	140426836	1	0	0	0	0
S/G/Y/R/B/O	NT_004434	AL356957	140212134	3			AC053486	57698	1	91929	0	23752	115681
S/G/Y/R/B/O	NT_004434	AL356957	140212134	3			AL627100	57698	1	71994	12343	0	84337
S/G/Y/R/B/O	NT_004434	AC027181	140426836	1	chr1	NT_004434	AC084789	140478507	1	0	0	0	0
S/G/Y/R/B/O	NT_004434	AC027181	140426836	1	chr1	NT_004434	AL451043	140510104	3	40863	0	0	40863
S/G/Y/R/B/O	NT_004434	AC027181	140426836	1	chr1	NT_004434	AL592284	140743006	3	11981	0	37989	49970
S/G/Y/R/B/O	NT_004434	AC027181	140426836	1			AC024500	128835214	1	11965	0	35862	47827
S/G/Y/R/B/O	NT_004434	AC027181	140426836	1			AC027209	128835214	1	17020	0	9362	26382
S/G/Y/R/B/O	NT_004434	AC027181	140426836	1			AC027727	128835214	1	14089	0	9981	24070
S/G/Y/R/B/O	NT_004434	AC027181	140426836	1			AL391556	141189742	1	29153	10083	0	39236
S/G/Y/R/B/O	NT_004434	AC084789	140478507	1	chr1	NT_004434	AL451043	140510104	3	0	0	0	0
S/G/Y/R/B/O	NT_004434	AC084789	140478507	1	chr1	NT_032975	AC019250	121730634	1	21042	0	0	21042
S/G/Y/R/B/O	NT_004434	AC084789	140478507	1	chr1	NT_032975	AL512503	121512839	3	33833	0	0	33833
S/G/Y/R/B/O	NT_004434	AL451043	140510104	3	chr1	NT_004434	AL049742	140541126	3	21342	0	0	21342
S/G/Y/R/B/O	NT_004434	AL451043	140510104	3	chr1	NT_004434	AC027181	140426836	1	40863	0	0	40863
S/G/Y/R/B/O	NT_004434	AL049742	140541126	3	chr1	NT_004434	AL356004	140656560	3	0	0	0	0
S/G/Y/R/B/O	NT_004434	AL356004	140656560	3	chr1	NT_004434	AL365221	140691752	1	0	0	0	0
S/G/Y/R/B/O	NT_004434	AL356004	140656560	3			AL611965	151161234	1	35192	0	0	35192
S/G/Y/R/B/O	NT_004434	AL365221	140691752	1	chr1	NT_004434	AL592284	140743006	3	0	0	0	0
S/G/Y/R/B/O	NT_004434	AL365221	140691752	1	chr1	NT_004434	AC022965	142491016	1	23077	0	7042	30119
S/G/Y/R/B/O	NT_004434	AL365221	140691752	1			AL109937	142491016	1	21214	2565	6060	29839
S/G/Y/R/B/O	NT_004434	AL365221	140691752	1			AL611965	142491016	1	43842	0	0	43842
S/G/Y/R/B/O	NT_004434	AL592284	140743006	3	chr1	NT_004434	AL138796	140913675	3	0	0	0	0
S/G/Y/R/B/O	NT_004434	AL592284	140743006	3	chr1	NT_004434	AC027181	140426836	1	11981	0	37989	49970
S/G/Y/R/B/O	NT_004434	AL592284	140743006	3	chr1	NT_029226	AL358813	151305861	3	58818	0	0	58818
S/G/Y/R/B/O	NT_004434	AL592284	140743006	3	chr1	NT_029226	AL451058	151295191	3	10542	0	0	10542
S/G/Y/R/B/O	NT_004434	AL592284	140743006	3			AC018593	142491016	1	37020	2023	3914	42957
S/G/Y/R/B/O	NT_004434	AL592284	140743006	3			AC026900	142491016	1	13949	0	46228	60177
S/G/Y/R/B/O	NT_004434	AL592284	140743006	3			AC027209	140426836	1	68925	8213	0	77138
S/G/Y/R/B/O	NT_004434	AL592284	140743006	3			AC027727	140426836	1	14863	1851	52392	69106
S/G/Y/R/B/O	NT_004434	AL592284	140743006	3			AL162612	4676498	1	10463	2236	12973	25672
S/G/Y/R/B/O	NT_004434	AL592284	140743006	3			AL390296	151305861	1	12624	0	0	12624
S/G/Y/R/B/O	NT_004434	AL138796	140913675	3	chr1	NT_004434	AL590452	141032612	3	29409	0	0	29409
S/G/Y/R/B/O	NT_004434	AL138796	140913675	3			AC026900	151295191	1	73718	5854	2555	82127
S/G/Y/R/B/O	NT_004434	AL138796	140913675	3			AC027209	151295191	1	29127	0	0	29127
S/G/Y/R/B/O	NT_004434	AL138796	140913675	3			AC027727	151295191	1	11848	0	1481	13329
S/G/Y/R/B/O	NT_004434	AL138796	140913675	3			AL109937	151161234	1	18024	0	8169	26193
S/G/Y/R/B/O	NT_004434	AL590452	141032612	3	chr1	NT_004434	AL138791	141160004	3	0	0	0	0
S/G/Y/R/B/O	NT_004434	AL590452	141032612	3			AC016372	141032612	1	91468	0	12105	103573
S/G/Y/R/B/O	NT_004434	AL590452	141032612	3			AC018405	141032612	1	86701	2529	1805	91035
S/G/Y/R/B/O	NT_004434	AL590452	141032612	3			AC027209	141032612	1	11003	0	0	11003
S/G/Y/R/B/O	NT_004434	AL590452	141032612	3			AL390296	140913675	1	42573	0	0	42573
S/G/Y/R/B/O	NT_004434	AL138791	141160004	3	chr1	NT_004434	AL359758	141189742	3	0	0	0	0
S/G/Y/R/B/O	NT_004434	AL138791	141160004	3			AC016372	140913675	1	31129	0	0	31129
S/G/Y/R/B/O	NT_004434	AL138791	141160004	3			AC018405	140913675	1	30594	0	0	30594
S/G/Y/R/B/O	NT_004434	AL359758	141189742	3	chr1	NT_004434	AL049715	141273577	3	0	0	0	0
S/G/Y/R/B/O	NT_004434	AL359758	141189742	3			AC016372	140913675	1	28347	0	0	28347
S/G/Y/R/B/O	NT_004434	AL049715	141273577	3	chr1	NT_004434	AL592307	141418204	1	131900	0	0	131900
S/G/Y/R/B/O	NT_004434	AL049715	141273577	3	chr1	NT_032975	AC019250	121730634	1	63562	0	18140	81702
S/G/Y/R/B/O	NT_004434	AL049715	141273577	3	chr1	NT_029226	AC073223	151161234	1	30153	0	23264	53417
S/G/Y/R/B/O	NT_004434	AL049715	141273577	3	chr1	NT_032975	AL596222	121620451	3	65819	0	0	65819
S/G/Y/R/B/O	NT_004434	AL049715	141273577	3			AC018381	140426836	1	40536	0	46919	87455
S/G/Y/R/B/O	NT_004434	AL049715	141273577	3			AC024119	121730634	1	45767	5771	27287	78825
S/G/Y/R/B/O	NT_004434	AL049715	141273577	3			AL390735	140478507	1	18542	0	14563	33105
S/G/Y/R/B/O	NT_004434	AL592307	141418204	1	chr1	NT_004434	AL359176	141429167	1	0	0	0	0
S/G/Y/R/B/O	NT_004434	AL592307	141418204	1	chr1	NT_032975	AC019250	121730634	1	63540	0	18145	81685
S/G/Y/R/B/O	NT_004434	AL592307	141418204	1	chr1	NT_029226	AC073223	151161234	1	30134	2029	30709	62872
S/G/Y/R/B/O	NT_004434	AL592307	141418204	1	chr1	NT_032975	AL596222	121620451	3	53670	0	0	53670
S/G/Y/R/B/O	NT_004434	AL592307	141418204	1			AC018381	121620451	1	87698	30620	44092	162410
S/G/Y/R/B/O	NT_004434	AL592307	141418204	1			AC024119	121730634	1	39623	5771	43102	88496
S/G/Y/R/B/O	NT_004434	AL592307	141418204	1			AL359093	141273577	1	53319	0	47227	100546
S/G/Y/R/B/O	NT_004434	AL592307	141418204	1			AL390735	141273577	1	18565	0	14569	33134
S/G/Y/R/B/O	NT_004434	AL359176	141429167	1	chr1	NT_004434	AL139152	141542594	3	0	0	16295	16295
S/G/Y/R/B/O	NT_004434	AL359176	141429167	1			AL360154	141542594	1	69644	0	0	69644
S/G/Y/R/B/O	NT_004434	AL139152	141542594	3	chr1	NT_004434	AL596177	141598137	3	0	0	0	0
S/G/Y/R/B/O	NT_004434	AL596177	141598137	3	chr1	NT_004434	AL356378	141687224	3	0	1998	0	1998
S/G/Y/R/B/O	NT_004434	AL596177	141598137	3			AC015706	141429167	1	86034	2034	0	88068
S/G/Y/R/B/O	NT_004434	AL356378	141687224	3	chr1	NT_004434	AL391904	141888181	3	0	0	0	0
S/G/Y/R/B/O	NT_004434	AL356378	141687224	3			AC015706	141687224	1	94751	0	0	94751
S/G/Y/R/B/O	NT_004434	AL391904	141888181	3	chr1	NT_004434	AL590667	141954403	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004434	AL391904	141888181	3			AC027362	141598137	1	44645	0	0	44645
S/G/Y/R/B/O	NT_004434	AL590667	141954403	3	chr1	NT_004434	AL359207	142127897	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004434	AL590667	141954403	3			AC025709	141954403	1	69026	6617	27107	102750
S/G/Y/R/B/O	NT_004434	AL590667	141954403	3			AC027362	141954403	1	150754	0	0	150754
S/G/Y/R/B/O	NT_004434	AL359207	142127897	3	chr1	NT_004434	AL365260	142238604	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004434	AL359207	142127897	3			AC025709	141888181	1	30876	6955	5155	42986
S/G/Y/R/B/O	NT_004434	AL365260	142238604	3	chr1	NT_004434	AL445591	142351016	3	2000	0	0	2000
S/G/Y/R/B/O	NT_004434	AL365260	142238604	3	chr1	NT_004434	AC025692	142489208	1	36127	0	1108	37235
S/G/Y/R/B/O	NT_004434	AL445591	142351016	3	chr1	NT_004434	AC025692	142489208	1	69884	9300	40451	119635
S/G/Y/R/B/O	NT_004434	AC025692	142489208	1	chr1	NT_004434	AC022965	142491016	1	0	0	0	0
S/G/Y/R/B/O	NT_004434	AC025692	142489208	1	chr1	NT_004434	AL365260	142238604	3	36127	0	1108	37235
S/G/Y/R/B/O	NT_004434	AC022965	142491016	1	chr1	NT_004434	AL355505	142551045	3	0	0	0	0
S/G/Y/R/B/O	NT_004434	AC022965	142491016	1	chr1	NT_004434	AL365221	140691752	1	23077	0	7042	30119
S/G/Y/R/B/O	NT_004434	AC022965	142491016	1	chr1	NT_004434	AL390725	142804518	1	87796	9707	1952	99455
S/G/Y/R/B/O	NT_004434	AC022965	142491016	1			AL611965	142804518	1	112525	9707	1952	124184
S/G/Y/R/B/O	NT_004434	AL355505	142551045	3	chr1	NT_004434	AL138842	142574993	3	0	0	0	0
S/G/Y/R/B/O	NT_004434	AL355505	142551045	3			AL359093	142804518	1	23942	0	0	23942
S/G/Y/R/B/O	NT_004434	AL138842	142574993	3	chr1	NT_004434	AL160282	142600042	2	0	0	0	0
S/G/Y/R/B/O	NT_004434	AL138842	142574993	3			AL359093	142804518	1	26954	0	0	26954
S/G/Y/R/B/O	NT_004434	AL160282	142600042	2	chr1	NT_004434	AL390725	142804518	1	16877	0	0	16877
S/G/Y/R/B/O	NT_004434	AL160282	142600042	2			AL359093	142804518	1	16673	0	0	16673
S/G/Y/R/B/O	NT_004434	AL160282	142600042	2			AL611965	142804518	1	16877	0	0	16877
S/G/Y/R/B/O	NT_004434	AL390725	142804518	1
S/G/Y/R/B/O	NT_004434	AL390725	142804518	1	chr1	NT_004434	AC022965	142491016	1	87796	9707	1952	99455
S/G/Y/R/B/O	NT_004434	AL390725	142804518	1			AL611965	142600042	1	139961	0	0	139961