Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_029860

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_029860	AC064867	106300655	1	chr1	NT_029860	AC114497	106305537	1	0	0	0	0
S/G/Y/R/B/O	NT_029860	AC064867	106300655	1	chr1	NT_029860	AL590631	106456344	3	62767	17331	31186	111284
S/G/Y/R/B/O	NT_029860	AC064867	106300655	1	chr1	NT_029860	AL672014	106608060	2	54012	2211	15193	71416
S/G/Y/R/B/O	NT_029860	AC064867	106300655	1			AC073074	106015269	1	23449	2211	10399	36059
S/G/Y/R/B/O	NT_029860	AC114497	106305537	1	chr1	NT_029860	AL590724	106431245	3	2001	0	0	2001
S/G/Y/R/B/O	NT_029860	AC114497	106305537	1			AC026941	106608060	1	124296	0	0	124296
S/G/Y/R/B/O	NT_029860	AL590724	106431245	3	chr1	NT_029860	AL590631	106456344	3	0	0	0	0
S/G/Y/R/B/O	NT_029860	AL590631	106456344	3	chr1	NT_029860	AL672014	106608060	2	61881	0	0	61881
S/G/Y/R/B/O	NT_029860	AL590631	106456344	3	chr1	NT_029860	AC064867	106300655	1	62767	17331	31186	111284
S/G/Y/R/B/O	NT_029860	AL590631	106456344	3			AC073074	106300655	1	44564	2921	8203	55688
S/G/Y/R/B/O	NT_029860	AL672014	106608060	2	chr1	NT_029860	AL589665	106706664	1	0	0	0	0
S/G/Y/R/B/O	NT_029860	AL672014	106608060	2	chr1	NT_029860	AC064867	106300655	1	54012	2211	15193	71416
S/G/Y/R/B/O	NT_029860	AL672014	106608060	2			AC073074	106300655	1	82531	11329	57369	151229
S/G/Y/R/B/O	NT_029860	AL589665	106706664	1	chr1	NT_029860	AC019318	106806313	1	70814	0	4399	75213
S/G/Y/R/B/O	NT_029860	AL589665	106706664	1	chr1	NT_029860	AL512844	106828149	3	57170	0	0	57170
S/G/Y/R/B/O	NT_029860	AL589665	106706664	1			AC012304	106456344	1	115943	0	9640	125583
S/G/Y/R/B/O	NT_029860	AL589665	106706664	1			AC073097	106806313	1	28513	2752	10747	42012
S/G/Y/R/B/O	NT_029860	AL589665	106706664	1			AC074197	106806313	1	64840	3350	42674	110864
S/G/Y/R/B/O	NT_029860	AL589665	106706664	1			AC096923	106806313	1	119576	0	0	119576
S/G/Y/R/B/O	NT_029860	AL589665	106706664	1			AL606936	106828149	3	52755	0	0	52755
S/G/Y/R/B/O	NT_029860	AL589665	106706664	1			AL606937	106828149	3	19203	0	0	19203
S/G/Y/R/B/O	NT_029860	AC019318	106806313	1	chr1	NT_029860	AL512844	106828149	3	72491	1715	0	74206
S/G/Y/R/B/O	NT_029860	AC019318	106806313	1			AC012304	106828149	1	42623	1714	1333	45670
S/G/Y/R/B/O	NT_029860	AC019318	106806313	1			AC073097	106828149	1	15780	2654	11899	30333
S/G/Y/R/B/O	NT_029860	AC019318	106806313	1			AC074197	106828149	1	35370	1621	20582	57573
S/G/Y/R/B/O	NT_029860	AC019318	106806313	1			AC096923	106828149	1	33957	0	20539	54496
S/G/Y/R/B/O	NT_029860	AC019318	106806313	1			AL606936	106706664	3	30145	0	3069	33214
S/G/Y/R/B/O	NT_029860	AL512844	106828149	3	chr1	NT_029860	AL451052	106987166	3	0	0	0	0
S/G/Y/R/B/O	NT_029860	AL512844	106828149	3	chr1	NT_029860	AL589665	106706664	1	57170	0	0	57170
S/G/Y/R/B/O	NT_029860	AL512844	106828149	3			AC012304	106706664	1	82107	0	13827	95934
S/G/Y/R/B/O	NT_029860	AL512844	106828149	3			AC073097	106806313	1	116039	7040	18282	141361
S/G/Y/R/B/O	NT_029860	AL512844	106828149	3			AC074197	106806313	1	57645	2471	14695	74811
S/G/Y/R/B/O	NT_029860	AL512844	106828149	3			AL606936	106706664	3	52475	0	0	52475
S/G/Y/R/B/O	NT_029860	AL451052	106987166	3	chr1	NT_029860	AL591162	107095030	3	0	0	0	0
S/G/Y/R/B/O	NT_029860	AL451052	106987166	3			AC073097	106706664	1	37562	0	4126	41688
S/G/Y/R/B/O	NT_029860	AL591162	107095030	3	chr1	NT_029860	AL355306	107097925	3	0	0	0	0
S/G/Y/R/B/O	NT_029860	AL355306	107097925	3	chr1	NT_029860	AL606526	107202985	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029860	AL355306	107097925	3			AC018623	106706664	1	89460	0	15402	104862
S/G/Y/R/B/O	NT_029860	AL606526	107202985	3	chr1	NT_029860	AC103596	107314639	1	23627	0	0	23627
S/G/Y/R/B/O	NT_029860	AL606526	107202985	3			AC018623	107202985	1	59882	0	0	59882
S/G/Y/R/B/O	NT_029860	AC103596	107314639	1	chr1	NT_029860	AL162402	107349203	1	42869	3676	0	46545
S/G/Y/R/B/O	NT_029860	AL162402	107349203	1	chr1	NT_029860	AC093119	107462528	3	15741	2452	0	18193
S/G/Y/R/B/O	NT_029860	AC093119	107462528	3	chr1	NT_029860	AL499605	107587131	1	23844	0	0	23844
S/G/Y/R/B/O	NT_029860	AL499605	107587131	1	chr1	NT_029860	AL596327	107751619	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029860	AL596327	107751619	3	chr1	NT_029860	AL627169	107844356	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029860	AL627169	107844356	3	chr1	NT_029860	AL590453	107877156	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029860	AL590453	107877156	3	chr1	NT_029860	AL645858	108062617	3	0	1999	0	1999
S/G/Y/R/B/O	NT_029860	AL590453	107877156	3	chr1	NT_029860	AC074376	108090986	1	36030	0	0	36030
S/G/Y/R/B/O	NT_029860	AL645858	108062617	3	chr1	NT_029860	AC074376	108090986	1	29757	0	0	29757
S/G/Y/R/B/O	NT_029860	AC074376	108090986	1	chr1	NT_029860	AL355539	108092126	1	78585	5636	0	84221
S/G/Y/R/B/O	NT_029860	AC074376	108090986	1	chr1	NT_029860	AL590427	108181279	1	16446	0	0	16446
S/G/Y/R/B/O	NT_029860	AC074376	108090986	1	chr1	NT_029860	AL590453	107877156	3	36030	0	0	36030
S/G/Y/R/B/O	NT_029860	AL355539	108092126	1	chr1	NT_029860	AL590427	108181279	1	26062	0	1847	27909
S/G/Y/R/B/O	NT_029860	AL590427	108181279	1	chr1	NT_029860	AL607133	108299523	2	45482	0	0	45482
S/G/Y/R/B/O	NT_029860	AL590427	108181279	1	chr1	NT_029860	AC074376	108090986	1	16446	0	0	16446
S/G/Y/R/B/O	NT_029860	AL607133	108299523	2	chr1	NT_029860	AC016085	108449813	1	28688	0	0	28688
S/G/Y/R/B/O	NT_029860	AL607133	108299523	2			AL513187	108457438	3	122032	0	0	122032
S/G/Y/R/B/O	NT_029860	AC016085	108449813	1	chr1	NT_029860	AC114491	108457438	1	141321	0	0	141321
S/G/Y/R/B/O	NT_029860	AC016085	108449813	1			AL513187	108457438	3	17955	0	0	17955
S/G/Y/R/B/O	NT_029860	AC114491	108457438	1	chr1	NT_029860	AL513206	108675136	3	0	0	0	0
S/G/Y/R/B/O	NT_029860	AL513206	108675136	3	chr1	NT_029860	AL591042	108783260	3	0	1999	0	1999
S/G/Y/R/B/O	NT_029860	AL591042	108783260	3	chr1	NT_029860	AC021401	108929288	1	39953	0	0	39953
S/G/Y/R/B/O	NT_029860	AL591042	108783260	3	chr1	NT_029860	AL353892	108939696	2	39088	0	0	39088
S/G/Y/R/B/O	NT_029860	AC021401	108929288	1	chr1	NT_029860	AL353892	108939696	2	129862	2222	0	132084
S/G/Y/R/B/O	NT_029860	AC021401	108929288	1	chr1	NT_029860	AL390036	109044759	3	14146	0	0	14146
S/G/Y/R/B/O	NT_029860	AC021401	108929288	1	chr1	NT_029860	AL391235	108970178	3	41220	0	0	41220
S/G/Y/R/B/O	NT_029860	AL353892	108939696	2	chr1	NT_029860	AL391235	108970178	3	65530	0	0	65530
S/G/Y/R/B/O	NT_029860	AL353892	108939696	2	chr1	NT_029860	AL591042	108783260	3	39088	0	0	39088
S/G/Y/R/B/O	NT_029860	AL391235	108970178	3	chr1	NT_029860	AL390036	109044759	3	0	1999	0	1999
S/G/Y/R/B/O	NT_029860	AL391235	108970178	3	chr1	NT_029860	AC021401	108929288	1	41220	0	0	41220
S/G/Y/R/B/O	NT_029860	AL390036	109044759	3	chr1	NT_029860	AL359258	109225796	3	0	0	0	0
S/G/Y/R/B/O	NT_029860	AL390036	109044759	3	chr1	NT_029860	AC021401	108929288	1	14146	0	0	14146
S/G/Y/R/B/O	NT_029860	AL390036	109044759	3	chr1	NT_029860	AL356110	109412518	1	14286	18868	21852	55006
S/G/Y/R/B/O	NT_029860	AL390036	109044759	3			AC013627	109044759	1	88987	0	0	88987
S/G/Y/R/B/O	NT_029860	AL359258	109225796	3	chr1	NT_029860	AL356110	109412518	1	26892	8055	7249	42196
S/G/Y/R/B/O	NT_029860	AL359258	109225796	3	chr1	NT_029860	AL390038	109444112	3	52887	0	0	52887
S/G/Y/R/B/O	NT_029860	AL359258	109225796	3	chr1	NT_029860	AL672086	109431210	1	36185	15642	2296	54123
S/G/Y/R/B/O	NT_029860	AL359258	109225796	3			AC013627	108970178	1	82395	0	0	82395
S/G/Y/R/B/O	NT_029860	AL356110	109412518	1	chr1	NT_029860	AL672086	109431210	1	0	1675	3495	5170
S/G/Y/R/B/O	NT_029860	AL356110	109412518	1	chr1	NT_029860	AL390036	109044759	3	14286	18868	21852	55006
S/G/Y/R/B/O	NT_029860	AL356110	109412518	1			AC013627	109431210	1	32708	19019	53706	105433
S/G/Y/R/B/O	NT_029860	AL672086	109431210	1	chr1	NT_029860	AL390038	109444112	3	15715	6786	0	22501
S/G/Y/R/B/O	NT_029860	AL672086	109431210	1	chr1	NT_029860	AL359258	109225796	3	36185	15642	2296	54123
S/G/Y/R/B/O	NT_029860	AL390038	109444112	3	chr1	NT_029860	AL392088	109497114	3	0	0	0	0
S/G/Y/R/B/O	NT_029860	AL390038	109444112	3	chr1	NT_029860	AL359258	109225796	3	52887	0	0	52887
S/G/Y/R/B/O	NT_029860	AL392088	109497114	3	chr1	NT_029860	AC026072	109570091	1	15001	2836	13735	31572
S/G/Y/R/B/O	NT_029860	AC026072	109570091	1	chr1	NT_029860	AL160171	109575413	1	122562	7821	0	130383
S/G/Y/R/B/O	NT_029860	AC026072	109570091	1	chr1	NT_029860	AL354724	109734267	1	16153	0	0	16153
S/G/Y/R/B/O	NT_029860	AL160171	109575413	1	chr1	NT_029860	AL354724	109734267	1	31700	2586	7299	41585
S/G/Y/R/B/O	NT_029860	AL354724	109734267	1	chr1	NT_029860	AL591719	109734668	3	41365	6622	30234	78221
S/G/Y/R/B/O	NT_029860	AL354724	109734267	1	chr1	NT_029860	AC026072	109570091	1	16153	0	0	16153
S/G/Y/R/B/O	NT_029860	AL354724	109734267	1	chr1	NT_029860	AL449266	109831085	3	47555	0	2118	49673
S/G/Y/R/B/O	NT_029860	AL354724	109734267	1			AC025386	7059329	1	30800	0	9842	40642
S/G/Y/R/B/O	NT_029860	AL354724	109734267	1			AL357116	47738460	1	20172	2749	5258	28179
S/G/Y/R/B/O	NT_029860	AL591719	109734668	3	chr1	NT_029860	AL449266	109831085	3	0	0	0	0
S/G/Y/R/B/O	NT_029860	AL591719	109734668	3			AC025386	109734668	1	12604	0	0	12604
S/G/Y/R/B/O	NT_029860	AL591719	109734668	3			AL357116	109734267	1	46002	0	3850	49852
S/G/Y/R/B/O	NT_029860	AL449266	109831085	3	chr1	NT_029860	AL356488	110011634	3	0	0	0	0
S/G/Y/R/B/O	NT_029860	AL449266	109831085	3	chr1	NT_029860	AC016518	110099949	1	58626	4485	4980	68091
S/G/Y/R/B/O	NT_029860	AL449266	109831085	3	chr1	NT_029860	AL354724	109734267	1	47555	0	2118	49673
S/G/Y/R/B/O	NT_029860	AL449266	109831085	3			AC025386	110099949	1	139597	2336	15766	157699
S/G/Y/R/B/O	NT_029860	AL449266	109831085	3			AL357116	109734267	1	57077	13790	13824	84691
S/G/Y/R/B/O	NT_029860	AL449266	109831085	3			AL358592	109734267	1	56429	6738	2566	65733
S/G/Y/R/B/O	NT_029860	AL356488	110011634	3	chr1	NT_029860	AC016518	110099949	1	35094	12240	3112	50446
S/G/Y/R/B/O	NT_029860	AL356488	110011634	3			AL358592	110099949	1	29551	0	0	29551
S/G/Y/R/B/O	NT_029860	AC016518	110099949	1	chr1	NT_029860	AL450468	110103733	3	0	0	0	0
S/G/Y/R/B/O	NT_029860	AC016518	110099949	1	chr1	NT_029860	AC011645	110919583	1	30256	11273	8961	50490
S/G/Y/R/B/O	NT_029860	AC016518	110099949	1	chr1	NT_029860	AL138933	110835539	3	15540	0	0	15540
S/G/Y/R/B/O	NT_029860	AC016518	110099949	1	chr1	NT_029860	AL449266	109831085	3	58626	4485	4980	68091
S/G/Y/R/B/O	NT_029860	AC016518	110099949	1			AC025386	5015243	1	29344	4377	4839	38560
S/G/Y/R/B/O	NT_029860	AC016518	110099949	1			AL358592	110011634	1	38584	9627	6010	54221
S/G/Y/R/B/O	NT_029860	AL450468	110103733	3	chr1	NT_029860	AL158847	110143744	3	0	0	1497	1497
S/G/Y/R/B/O	NT_029860	AL158847	110143744	3	chr1	NT_029860	AC000032	110277195	3	0	0	0	0
S/G/Y/R/B/O	NT_029860	AC000032	110277195	3	chr1	NT_029860	AC000031	110305339	3	4725	0	0	4725
S/G/Y/R/B/O	NT_029860	AC000032	110277195	3			AC000037	110305339	3	10303	0	0	10303
S/G/Y/R/B/O	NT_029860	AC000031	110305339	3	chr1	NT_029860	AL355310	110339319	3	16172	0	0	16172
S/G/Y/R/B/O	NT_029860	AC000031	110305339	3			AL353702	110277195	1	20042	0	0	20042
S/G/Y/R/B/O	NT_029860	AL355310	110339319	3	chr1	NT_029860	AL355145	110401087	2	49145	0	0	49145
S/G/Y/R/B/O	NT_029860	AL355310	110339319	3			AC011780	110305339	1	58847	9831	7647	76325
S/G/Y/R/B/O	NT_029860	AL355310	110339319	3			AL353702	110305339	1	18123	0	0	18123
S/G/Y/R/B/O	NT_029860	AL355145	110401087	2	chr1	NT_029860	AC073364	110503914	1	25017	0	2584	27601
S/G/Y/R/B/O	NT_029860	AL355145	110401087	2			AC011780	110401087	1	77385	7493	7693	92571
S/G/Y/R/B/O	NT_029860	AC073364	110503914	1	chr1	NT_029860	AL356735	110515232	3	43121	0	0	43121
S/G/Y/R/B/O	NT_029860	AC073364	110503914	1	chr1	NT_029860	AL390252	110573183	3	61072	2586	0	63658
S/G/Y/R/B/O	NT_029860	AC073364	110503914	1			AC010830	110515232	1	33475	0	0	33475
S/G/Y/R/B/O	NT_029860	AC073364	110503914	1			AC011780	110515232	1	18213	0	0	18213
S/G/Y/R/B/O	NT_029860	AL356735	110515232	3	chr1	NT_029860	AL390252	110573183	3	0	0	0	0
S/G/Y/R/B/O	NT_029860	AL356735	110515232	3			AC010830	110573183	1	17120	0	18351	35471
S/G/Y/R/B/O	NT_029860	AL390252	110573183	3	chr1	NT_029860	AL356389	110740424	3	2000	0	0	2000
S/G/Y/R/B/O	NT_029860	AL390252	110573183	3	chr1	NT_029860	AC073364	110503914	1	61072	2586	0	63658
S/G/Y/R/B/O	NT_029860	AL390252	110573183	3			AC010830	110401087	1	58086	2403	2748	63237
S/G/Y/R/B/O	NT_029860	AL390252	110573183	3			AL157901	110503914	1	55153	0	0	55153
S/G/Y/R/B/O	NT_029860	AL356389	110740424	3	chr1	NT_029860	AL138933	110835539	3	0	1995	0	1995
S/G/Y/R/B/O	NT_029860	AL356389	110740424	3			AL157901	110835539	1	50806	0	0	50806
S/G/Y/R/B/O	NT_029860	AL138933	110835539	3	chr1	NT_029860	AC011645	110919583	1	28966	4888	29721	63575
S/G/Y/R/B/O	NT_029860	AL138933	110835539	3	chr1	NT_029860	AC016518	110099949	1	15540	0	0	15540
S/G/Y/R/B/O	NT_029860	AC011645	110919583	1
S/G/Y/R/B/O	NT_029860	AC011645	110919583	1	chr1	NT_029860	AC016518	110099949	1	30256	11273	8961	50490