Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_021877

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_021877	AC104465	197912622	1	chr1	NT_021877	AL162406	198016484	1	57549	0	180	57729
S/G/Y/R/B/O	NT_021877	AL162406	198016484	1	chr1	NT_021877	AC092810	198039689	3	31306	6777	0	38083
S/G/Y/R/B/O	NT_021877	AC092810	198039689	3	chr1	NT_021877	AL589741	198148380	3	54718	0	0	54718
S/G/Y/R/B/O	NT_021877	AC092810	198039689	3			AC027737	197912622	1	22559	1553	1318	25430
S/G/Y/R/B/O	NT_021877	AC092810	198039689	3			AL391066	198016484	2	80109	0	0	80109
S/G/Y/R/B/O	NT_021877	AL589741	198148380	3	chr1	NT_021877	AL035408	198307742	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL589741	198148380	3			AC027737	198148380	1	89999	1553	3567	95119
S/G/Y/R/B/O	NT_021877	AL589741	198148380	3			AL391066	198039689	2	134658	0	0	134658
S/G/Y/R/B/O	NT_021877	AL035408	198307742	3	chr1	NT_021877	AL023754	198396172	3	0	0	100	100
S/G/Y/R/B/O	NT_021877	AL035408	198307742	3			AC027737	198039689	1	40397	2598	0	42995
S/G/Y/R/B/O	NT_021877	AL023754	198396172	3	chr1	NT_021877	AL031316	198553947	3	0	0	100	100
S/G/Y/R/B/O	NT_021877	AL031316	198553947	3	chr1	NT_021877	AL022398	198651547	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL022398	198651547	3	chr1	NT_021877	AL022728	198787375	3	0	0	100	100
S/G/Y/R/B/O	NT_021877	AL022728	198787375	3	chr1	NT_021877	AL035046	198813799	3	0	0	100	100
S/G/Y/R/B/O	NT_021877	AL035046	198813799	3	chr1	NT_021877	AL022399	198833673	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL022399	198833673	3	chr1	NT_021877	AL022397	198918037	3	0	0	99	99
S/G/Y/R/B/O	NT_021877	AL022397	198918037	3	chr1	NT_021877	AL513263	199027240	3	2001	0	0	2001
S/G/Y/R/B/O	NT_021877	AL022397	198918037	3			AL355335	198833673	1	53345	7271	28396	89012
S/G/Y/R/B/O	NT_021877	AL513263	199027240	3	chr1	NT_021877	AL035414	199150789	3	0	1997	0	1997
S/G/Y/R/B/O	NT_021877	AL513263	199027240	3			AL355335	199150789	1	45754	6493	780	53027
S/G/Y/R/B/O	NT_021877	AL513263	199027240	3			AL356960	199150789	1	34640	8050	2222	44912
S/G/Y/R/B/O	NT_021877	AL513263	199027240	3			AL360077	199150789	1	14107	0	12611	26718
S/G/Y/R/B/O	NT_021877	AL035414	199150789	3	chr1	NT_021877	AL034351	199280030	3	0	0	100	100
S/G/Y/R/B/O	NT_021877	AL035414	199150789	3			AL356960	199280030	1	42194	16376	53430	112000
S/G/Y/R/B/O	NT_021877	AL035414	199150789	3			AL360077	199280030	1	42807	2823	12482	58112
S/G/Y/R/B/O	NT_021877	AL034351	199280030	3	chr1	NT_021877	AL590653	199417608	3	0	1996	0	1996
S/G/Y/R/B/O	NT_021877	AL590653	199417608	3	chr1	NT_021877	AL161736	199531811	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL161736	199531811	3	chr1	NT_021877	AL354681	199636614	3	0	1999	0	1999
S/G/Y/R/B/O	NT_021877	AL161736	199531811	3	chr1	NT_029226	AC013411	152303149	1	25917	0	13665	39582
S/G/Y/R/B/O	NT_021877	AL354681	199636614	3	chr1	NT_021877	AL591846	199742303	3	0	1999	0	1999
S/G/Y/R/B/O	NT_021877	AL591846	199742303	3	chr1	NT_021877	AL513315	199935788	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL591846	199742303	3			AL445652	199636614	1	91128	2934	8589	102651
S/G/Y/R/B/O	NT_021877	AL591846	199742303	3			AL445993	199636614	1	34700	21854	2031	58585
S/G/Y/R/B/O	NT_021877	AL513315	199935788	3	chr1	NT_021877	AC098935	200018235	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL513315	199935788	3			AC068122	199636614	1	41867	10017	25874	77758
S/G/Y/R/B/O	NT_021877	AL513315	199935788	3			AF390905	199636614	3	10986	0	0	10986
S/G/Y/R/B/O	NT_021877	AL513315	199935788	3			AL445652	199636614	1	73144	5313	0	78457
S/G/Y/R/B/O	NT_021877	AL513315	199935788	3			AL445993	199636614	1	21798	16759	0	38557
S/G/Y/R/B/O	NT_021877	AL513315	199935788	3			X78437	199636614	3	10302	0	0	10302
S/G/Y/R/B/O	NT_021877	AC098935	200018235	3	chr1	NT_021877	AL589672	200208800	3	0	1998	0	1998
S/G/Y/R/B/O	NT_021877	AC098935	200018235	3			AC023534	199636614	1	128269	8452	15119	151840
S/G/Y/R/B/O	NT_021877	AC098935	200018235	3			AC068122	199636614	1	66608	4159	22209	92976
S/G/Y/R/B/O	NT_021877	AC098935	200018235	3			AY062931	200208800	3	11106	0	0	11106
S/G/Y/R/B/O	NT_021877	AL589672	200208800	3	chr1	NT_021877	AL445493	200210794	3	0	1999	0	1999
S/G/Y/R/B/O	NT_021877	AL445493	200210794	3	chr1	NT_021877	AL596218	200367733	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL445493	200210794	3			AC010829	200210794	1	21493	0	0	21493
S/G/Y/R/B/O	NT_021877	AL445493	200210794	3			AC023534	200210794	1	47807	1627	0	49434
S/G/Y/R/B/O	NT_021877	AL596218	200367733	3	chr1	NT_021877	AL391597	200496668	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL596218	200367733	3	chr1	NT_021877	AC031978	200635792	1	22479	0	0	22479
S/G/Y/R/B/O	NT_021877	AL596218	200367733	3			AC010829	200208800	1	131236	0	0	131236
S/G/Y/R/B/O	NT_021877	AL596218	200367733	3			AL355527	200635792	1	70435	6554	9399	86388
S/G/Y/R/B/O	NT_021877	AL391597	200496668	3	chr1	NT_021877	AC031978	200635792	1	80045	0	34051	114096
S/G/Y/R/B/O	NT_021877	AL391597	200496668	3	chr1	NT_021877	AL691452	200640757	1	82720	0	0	82720
S/G/Y/R/B/O	NT_021877	AL391597	200496668	3			AF298224	200635792	3	17134	0	0	17134
S/G/Y/R/B/O	NT_021877	AL391597	200496668	3			AL160003	200635792	1	33588	0	0	33588
S/G/Y/R/B/O	NT_021877	AL391597	200496668	3			AL355527	200635792	1	50855	2125	0	52980
S/G/Y/R/B/O	NT_021877	AC031978	200635792	1	chr1	NT_021877	AL691452	200640757	1	36196	0	33754	69950
S/G/Y/R/B/O	NT_021877	AC031978	200635792	1	chr1	NT_021877	AL596218	200367733	3	22479	0	0	22479
S/G/Y/R/B/O	NT_021877	AC031978	200635792	1			AC010829	200640757	1	22479	0	0	22479
S/G/Y/R/B/O	NT_021877	AC031978	200635792	1			AF298224	200640757	3	17129	0	0	17129
S/G/Y/R/B/O	NT_021877	AC031978	200635792	1			AL160003	200640757	1	65240	0	0	65240
S/G/Y/R/B/O	NT_021877	AC031978	200635792	1			AL355527	200640757	1	60707	4222	0	64929
S/G/Y/R/B/O	NT_021877	AL691452	200640757	1	chr1	NT_021877	AL137789	200709558	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL691452	200640757	1	chr1	NT_021877	AL391597	200496668	3	82720	0	0	82720
S/G/Y/R/B/O	NT_021877	AL691452	200640757	1			AF298224	200635792	3	17161	0	0	17161
S/G/Y/R/B/O	NT_021877	AL691452	200640757	1			AL160003	200635792	1	87694	2970	33306	123970
S/G/Y/R/B/O	NT_021877	AL137789	200709558	3	chr1	NT_021877	AL365178	200844886	1	0	1987	0	1987
S/G/Y/R/B/O	NT_021877	AL137789	200709558	3			AL160003	200496668	1	29555	0	0	29555
S/G/Y/R/B/O	NT_021877	AL365178	200844886	1	chr1	NT_021877	AC084393	200877245	3	144910	0	0	144910
S/G/Y/R/B/O	NT_021877	AL365178	200844886	1	chr1	NT_021877	AL035091	200992120	3	21139	0	0	21139
S/G/Y/R/B/O	NT_021877	AL365178	200844886	1	chr1	NT_021877	AL035209	200914669	3	57433	0	0	57433
S/G/Y/R/B/O	NT_021877	AL365178	200844886	1	chr1	NT_021877	AL356275	202073405	1	18383	0	0	18383
S/G/Y/R/B/O	NT_021877	AC084393	200877245	3	chr1	NT_021877	AL035209	200914669	3	77484	0	0	77484
S/G/Y/R/B/O	NT_021877	AC084393	200877245	3	chr1	NT_021877	AL356275	202073405	1	84394	0	0	84394
S/G/Y/R/B/O	NT_021877	AL035209	200914669	3	chr1	NT_021877	AL035091	200992120	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL035209	200914669	3	chr1	NT_021877	AL365178	200844886	1	57433	0	0	57433
S/G/Y/R/B/O	NT_021877	AL035091	200992120	3	chr1	NT_021877	AL445254	201187698	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL035091	200992120	3	chr1	NT_021877	AL365178	200844886	1	21139	0	0	21139
S/G/Y/R/B/O	NT_021877	AL445254	201187698	3	chr1	NT_021877	AC093421	201194045	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AC093421	201194045	3	chr1	NT_021877	AC099793	201378013	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AC093421	201194045	3			AL391220	197912622	1	51102	0	0	51102
S/G/Y/R/B/O	NT_021877	AC099793	201378013	3	chr1	NT_021877	AL451184	201545854	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021877	AC099793	201378013	3			AL391220	78266393	1	83857	4554	11944	100355
S/G/Y/R/B/O	NT_021877	AL451184	201545854	3	chr1	NT_021877	AC096674	201581509	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021877	AC096674	201581509	3	chr1	NT_021877	AL662918	201758256	1	50244	0	0	50244
S/G/Y/R/B/O	NT_021877	AC096674	201581509	3			AC010734	201378013	1	113946	0	0	113946
S/G/Y/R/B/O	NT_021877	AC096674	201581509	3			AC026276	201378013	1	101472	0	0	101472
S/G/Y/R/B/O	NT_021877	AL662918	201758256	1	chr1	NT_021877	AL606753	201844364	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL662918	201758256	1			AC010734	201758256	1	72609	0	0	72609
S/G/Y/R/B/O	NT_021877	AL662918	201758256	1			AC026276	201758256	1	114755	0	0	114755
S/G/Y/R/B/O	NT_021877	AL662918	201758256	1			AL355533	201581509	1	19325	7434	0	26759
S/G/Y/R/B/O	NT_021877	AL662918	201758256	1			AL391234	201581509	1	21148	0	0	21148
S/G/Y/R/B/O	NT_021877	AL606753	201844364	3	chr1	NT_021877	AL590138	201909348	3	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL606753	201844364	3	chr1	NT_021877	AC016454	202285408	1	66970	0	0	66970
S/G/Y/R/B/O	NT_021877	AL606753	201844364	3			AL355533	202285408	1	15216	4998	2997	23211
S/G/Y/R/B/O	NT_021877	AL606753	201844364	3			AL391234	202285408	1	37270	2115	19934	59319
S/G/Y/R/B/O	NT_021877	AL590138	201909348	3	chr1	NT_021877	AL356275	202073405	1	2000	0	0	2000
S/G/Y/R/B/O	NT_021877	AL590138	201909348	3	chr1	NT_021877	AC016454	202285408	1	95099	0	0	95099
S/G/Y/R/B/O	NT_021877	AL590138	201909348	3			AL158017	202285408	1	47062	0	0	47062
S/G/Y/R/B/O	NT_021877	AL590138	201909348	3			AL391234	202073405	1	81502	5170	0	86672
S/G/Y/R/B/O	NT_021877	AL356275	202073405	1	chr1	NT_021877	AC016454	202285408	1	0	0	0	0
S/G/Y/R/B/O	NT_021877	AL356275	202073405	1	chr1	NT_021877	AC084393	200877245	3	84394	0	0	84394
S/G/Y/R/B/O	NT_021877	AL356275	202073405	1	chr1	NT_021877	AL365178	200844886	1	18383	0	0	18383
S/G/Y/R/B/O	NT_021877	AL356275	202073405	1			AL158017	200992120	1	73103	0	0	73103
S/G/Y/R/B/O	NT_021877	AC016454	202285408	1	chr1	NT_021877	AL691441	202301255	1	0	0	0	0
S/G/Y/R/B/O	NT_021877	AC016454	202285408	1	chr1	NT_021877	AL590138	201909348	3	95099	0	0	95099
S/G/Y/R/B/O	NT_021877	AC016454	202285408	1	chr1	NT_021877	AL606753	201844364	3	66970	0	0	66970
S/G/Y/R/B/O	NT_021877	AC016454	202285408	1			AL355533	133592494	1	21307	4998	6675	32980
S/G/Y/R/B/O	NT_021877	AC016454	202285408	1			AL391234	133592494	1	110953	7275	12354	130582
S/G/Y/R/B/O	NT_021877	AL691441	202301255	1	chr1	NT_021877	AC096636	202357555	1	114948	0	0	114948
S/G/Y/R/B/O	NT_021877	AL691441	202301255	1	chr1	NT_021877	AC099755	202462418	1	11565	0	0	11565
S/G/Y/R/B/O	NT_021877	AL691441	202301255	1	chr1	NT_031718	AL451104	214879451	1	13711	0	0	13711
S/G/Y/R/B/O	NT_021877	AL691441	202301255	1			AL391594	202462418	1	13711	0	0	13711
S/G/Y/R/B/O	NT_021877	AC096636	202357555	1	chr1	NT_021877	AC099755	202462418	1	48393	2118	0	50511
S/G/Y/R/B/O	NT_021877	AC099755	202462418	1	chr1	NT_021877	AL590132	202593224	2	20412	940	0	21352
S/G/Y/R/B/O	NT_021877	AC099755	202462418	1	chr1	NT_021877	AL691441	202301255	1	11565	0	0	11565
S/G/Y/R/B/O	NT_021877	AL590132	202593224	2	chr1	NT_021877	AL603791	202743314	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021877	AL603791	202743314	3	chr1	NT_021877	AC092017	202759030	3	2000	0	0	2000
S/G/Y/R/B/O	NT_021877	AC092017	202759030	3	chr1	NT_021877	AL611964	202950071	1	39033	0	34568	73601
S/G/Y/R/B/O	NT_021877	AL611964	202950071	1	chr1	NT_021877	AL590101	203052255	3	74557	0	0	74557
S/G/Y/R/B/O	NT_021877	AL590101	203052255	3	chr1	NT_021877	AC016192	203157962	1	91549	1920	1245	94714
S/G/Y/R/B/O	NT_021877	AL590101	203052255	3			AL390194	71539048	1	68381	0	0	68381
S/G/Y/R/B/O	NT_021877	AL590101	203052255	3			AL627109	202950071	1	98410	0	0	98410
S/G/Y/R/B/O	NT_021877	AC016192	203157962	1	chr1	NT_021877	AC105275	203166767	1	67178	0	0	67178
S/G/Y/R/B/O	NT_021877	AC016192	203157962	1			AL390194	203166767	1	103496	0	0	103496
S/G/Y/R/B/O	NT_021877	AC016192	203157962	1			AL627109	203052255	1	154900	0	0	154900
S/G/Y/R/B/O	NT_021877	AC105275	203166767	1	chr1	NT_021877	AL356310	203320598	1	76669	2640	0	79309
S/G/Y/R/B/O	NT_021877	AC105275	203166767	1	chr1	NT_021877	AC016047	203330103	1	26435	0	21797	48232
S/G/Y/R/B/O	NT_021877	AC105275	203166767	1			AL390194	203320598	1	78325	0	0	78325
S/G/Y/R/B/O	NT_021877	AC105275	203166767	1			AL627109	203320598	1	158452	5088	4669	168209
S/G/Y/R/B/O	NT_021877	AL356310	203320598	1	chr1	NT_021877	AC016047	203330103	1	102529	2642	33521	138692
S/G/Y/R/B/O	NT_021877	AL356310	203320598	1	chr1	NT_021877	AC096637	203429537	1	70494	0	0	70494
S/G/Y/R/B/O	NT_021877	AL356310	203320598	1			AL627109	203166767	1	79930	2640	0	82570
S/G/Y/R/B/O	NT_021877	AC016047	203330103	1	chr1	NT_021877	AC096637	203429537	1	0	0	79052	79052
S/G/Y/R/B/O	NT_021877	AC016047	203330103	1	chr1	NT_021877	AC105275	203166767	1	26435	0	21797	48232
S/G/Y/R/B/O	NT_021877	AC096637	203429537	1	chr1	NT_021877	AL445488	203590080	1	58274	0	0	58274
S/G/Y/R/B/O	NT_021877	AC096637	203429537	1	chr1	NT_021877	AL356310	203320598	1	70494	0	0	70494
S/G/Y/R/B/O	NT_021877	AL445488	203590080	1	chr1	NT_021877	AC092814	203599606	3	62304	2253	7763	72320
S/G/Y/R/B/O	NT_021877	AC092814	203599606	3	chr1	NT_021877	AL592297	203769851	3	0	1997	0	1997
S/G/Y/R/B/O	NT_021877	AL592297	203769851	3