Chromosome 1 - Clone Overlaps

Chromosome 1 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_004686

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_004686	AL627316	91828081	1	chr1	NT_004686	AC073301	91832511	1	0	0	0	0
S/G/Y/R/B/O	NT_004686	AL627316	91828081	1	chr1	NT_004686	AC034157	91880080	1	149389	0	6790	156179
S/G/Y/R/B/O	NT_004686	AL627316	91828081	1	chr1	NT_004686	AC092019	92106782	1	27478	0	0	27478
S/G/Y/R/B/O	NT_004686	AL627316	91828081	1	chr1	NT_004686	AC092783	91995019	3	68728	0	16413	85141
S/G/Y/R/B/O	NT_004686	AL627316	91828081	1	chr1	NT_004686	AP001778	91849180	1	24997	1811	0	26808
S/G/Y/R/B/O	NT_004686	AL627316	91828081	1			AL356487	91995019	1	62124	0	14404	76528
S/G/Y/R/B/O	NT_004686	AC073301	91832511	1	chr1	NT_004686	AP001778	91849180	1	0	0	0	0
S/G/Y/R/B/O	NT_004686	AC073301	91832511	1	chr1	NT_004302	AC013557	78697222	1	91029	0	1092	92121
S/G/Y/R/B/O	NT_004686	AC073301	91832511	1	chr1	NT_004302	AC019177	78779904	1	17825	844	6635	25304
S/G/Y/R/B/O	NT_004686	AC073301	91832511	1	chr1	NT_004686	AC019187	92611486	3	50881	0	1143	52024
S/G/Y/R/B/O	NT_004686	AC073301	91832511	1	chr1	NT_004686	AC093563	92777509	1	36005	5543	8273	49821
S/G/Y/R/B/O	NT_004686	AC073301	91832511	1	chr1	NT_004686	AC098690	92810115	1	34994	0	1144	36138
S/G/Y/R/B/O	NT_004686	AC073301	91832511	1			AL356236	92810115	1	54539	1576	5842	61957
S/G/Y/R/B/O	NT_004686	AP001778	91849180	1	chr1	NT_004686	AC034157	91880080	1	24998	1811	0	26809
S/G/Y/R/B/O	NT_004686	AP001778	91849180	1	chr1	NT_004686	AC092019	92106782	1	90216	1815	0	92031
S/G/Y/R/B/O	NT_004686	AP001778	91849180	1	chr1	NT_004686	AC092783	91995019	3	46160	1815	0	47975
S/G/Y/R/B/O	NT_004686	AP001778	91849180	1	chr1	NT_004686	AC092805	92192250	3	10074	0	0	10074
S/G/Y/R/B/O	NT_004686	AP001778	91849180	1	chr1	NT_004686	AL627316	91828081	1	24997	1811	0	26808
S/G/Y/R/B/O	NT_004686	AP001778	91849180	1			AL356487	92192250	1	55018	0	0	55018
S/G/Y/R/B/O	NT_004686	AC034157	91880080	1	chr1	NT_004686	AC092783	91995019	3	59908	0	26873	86781
S/G/Y/R/B/O	NT_004686	AC034157	91880080	1	chr1	NT_004686	AC092019	92106782	1	27478	0	0	27478
S/G/Y/R/B/O	NT_004686	AC034157	91880080	1	chr1	NT_004686	AL627316	91828081	1	149389	0	6790	156179
S/G/Y/R/B/O	NT_004686	AC034157	91880080	1			AL356487	91995019	1	49945	0	14402	64347
S/G/Y/R/B/O	NT_004686	AC092783	91995019	3	chr1	NT_004686	AC092019	92106782	1	52331	0	0	52331
S/G/Y/R/B/O	NT_004686	AC092783	91995019	3	chr1	NT_004686	AL627316	91828081	1	68728	0	16413	85141
S/G/Y/R/B/O	NT_004686	AC092783	91995019	3	chr1	NT_004686	AP001778	91849180	1	46160	1815	0	47975
S/G/Y/R/B/O	NT_004686	AC092783	91995019	3			AL356487	92106782	1	101448	0	0	101448
S/G/Y/R/B/O	NT_004686	AC092019	92106782	1	chr1	NT_004686	AC092805	92192250	3	0	0	0	0
S/G/Y/R/B/O	NT_004686	AC092019	92106782	1	chr1	NT_004686	AC034157	91880080	1	27478	0	0	27478
S/G/Y/R/B/O	NT_004686	AC092019	92106782	1	chr1	NT_004686	AL627316	91828081	1	27478	0	0	27478
S/G/Y/R/B/O	NT_004686	AC092019	92106782	1	chr1	NT_004686	AP001778	91849180	1	90216	1815	0	92031
S/G/Y/R/B/O	NT_004686	AC092019	92106782	1			AL356487	91995019	1	90594	0	0	90594
S/G/Y/R/B/O	NT_004686	AC092805	92192250	3	chr1	NT_004686	AL590094	92354837	3	0	0	0	0
S/G/Y/R/B/O	NT_004686	AC092805	92192250	3	chr1	NT_004686	AP001778	91849180	1	10074	0	0	10074
S/G/Y/R/B/O	NT_004686	AC092805	92192250	3			AC016319	91849180	1	125474	0	1006	126480
S/G/Y/R/B/O	NT_004686	AC092805	92192250	3			AC084151	91849180	1	73927	21843	16145	111915
S/G/Y/R/B/O	NT_004686	AC092805	92192250	3			AL355867	91849180	1	114970	9657	4242	128869
S/G/Y/R/B/O	NT_004686	AL590094	92354837	3	chr1	NT_004686	AC091614	92385785	3	0	1999	0	1999
S/G/Y/R/B/O	NT_004686	AL590094	92354837	3			AC016319	91849180	1	17841	0	0	17841
S/G/Y/R/B/O	NT_004686	AL590094	92354837	3			AC022219	91849180	1	14697	0	0	14697
S/G/Y/R/B/O	NT_004686	AL590094	92354837	3			AL355867	92385785	1	19916	0	4506	24422
S/G/Y/R/B/O	NT_004686	AC091614	92385785	3	chr1	NT_004686	AL136109	92491549	3	23736	0	0	23736
S/G/Y/R/B/O	NT_004686	AC091614	92385785	3			AC022219	92385785	1	72810	1756	32920	107486
S/G/Y/R/B/O	NT_004686	AC091614	92385785	3			AC084151	92385785	1	14306	8577	5528	28411
S/G/Y/R/B/O	NT_004686	AL136109	92491549	3	chr1	NT_004686	AC023147	92594150	1	83024	0	41708	124732
S/G/Y/R/B/O	NT_004686	AL136109	92491549	3	chr1	NT_004686	AC027738	92602284	1	32374	0	1106	33480
S/G/Y/R/B/O	NT_004686	AL136109	92491549	3	chr1	NT_004686	AL109744	92600008	1	18676	2881	5332	26889
S/G/Y/R/B/O	NT_004686	AL136109	92491549	3			AC022219	92354837	1	100872	0	0	100872
S/G/Y/R/B/O	NT_004686	AC023147	92594150	1	chr1	NT_004686	AL109744	92600008	1	35373	0	10817	46190
S/G/Y/R/B/O	NT_004686	AC023147	92594150	1	chr1	NT_004686	AC019187	92611486	3	22937	2053	0	24990
S/G/Y/R/B/O	NT_004686	AC023147	92594150	1	chr1	NT_004686	AC027738	92602284	1	43279	0	2334	45613
S/G/Y/R/B/O	NT_004686	AC023147	92594150	1	chr1	NT_004686	AL049743	92604687	3	45993	2047	0	48040
S/G/Y/R/B/O	NT_004686	AC023147	92594150	1			AC022219	92611486	1	53148	0	41715	94863
S/G/Y/R/B/O	NT_004686	AL109744	92600008	1	chr1	NT_004686	AC027738	92602284	1	30532	4017	3512	38061
S/G/Y/R/B/O	NT_004686	AL109744	92600008	1	chr1	NT_004686	AC019187	92611486	3	43197	0	11300	54497
S/G/Y/R/B/O	NT_004686	AL109744	92600008	1	chr1	NT_004686	AC093563	92777509	1	10121	0	0	10121
S/G/Y/R/B/O	NT_004686	AL109744	92600008	1	chr1	NT_004686	AL049743	92604687	3	59665	0	0	59665
S/G/Y/R/B/O	NT_004686	AL109744	92600008	1	chr1	NT_004686	AL136109	92491549	3	18676	2881	5332	26889
S/G/Y/R/B/O	NT_004686	AL109744	92600008	1			AC022219	92611486	1	11700	0	0	11700
S/G/Y/R/B/O	NT_004686	AC027738	92602284	1	chr1	NT_004686	AL049743	92604687	3	64741	4682	0	69423
S/G/Y/R/B/O	NT_004686	AC027738	92602284	1	chr1	NT_004686	AC019187	92611486	3	106481	8796	1208	116485
S/G/Y/R/B/O	NT_004686	AC027738	92602284	1	chr1	NT_004686	AC023147	92594150	1	43279	0	2334	45613
S/G/Y/R/B/O	NT_004686	AC027738	92602284	1	chr1	NT_004686	AC093563	92777509	1	43256	6968	0	50224
S/G/Y/R/B/O	NT_004686	AC027738	92602284	1	chr1	NT_004686	AC098690	92810115	1	32900	0	0	32900
S/G/Y/R/B/O	NT_004686	AC027738	92602284	1	chr1	NT_004686	AL136109	92491549	3	32374	0	1106	33480
S/G/Y/R/B/O	NT_004686	AC027738	92602284	1			AL356236	92491549	1	15021	0	0	15021
S/G/Y/R/B/O	NT_004686	AL049743	92604687	3	chr1	NT_004686	AC019187	92611486	3	78238	0	0	78238
S/G/Y/R/B/O	NT_004686	AL049743	92604687	3	chr1	NT_004686	AC023147	92594150	1	45993	2047	0	48040
S/G/Y/R/B/O	NT_004686	AL049743	92604687	3	chr1	NT_004686	AC093563	92777509	1	41652	0	0	41652
S/G/Y/R/B/O	NT_004686	AL049743	92604687	3	chr1	NT_004686	AL109744	92600008	1	59665	0	0	59665
S/G/Y/R/B/O	NT_004686	AC019187	92611486	3	chr1	NT_004686	AC093563	92777509	1	91754	0	0	91754
S/G/Y/R/B/O	NT_004686	AC019187	92611486	3	chr1	NT_004686	AC023147	92594150	1	22937	2053	0	24990
S/G/Y/R/B/O	NT_004686	AC019187	92611486	3	chr1	NT_004686	AC027738	92602284	1	106481	8796	1208	116485
S/G/Y/R/B/O	NT_004686	AC019187	92611486	3	chr1	NT_004686	AC073301	91832511	1	50881	0	1143	52024
S/G/Y/R/B/O	NT_004686	AC019187	92611486	3	chr1	NT_004686	AC098690	92810115	1	80627	0	0	80627
S/G/Y/R/B/O	NT_004686	AC019187	92611486	3	chr1	NT_004686	AL109744	92600008	1	43197	0	11300	54497
S/G/Y/R/B/O	NT_004686	AC019187	92611486	3			AL583862	92600008	1	12045	11163	5045	28253
S/G/Y/R/B/O	NT_004686	AC093563	92777509	1	chr1	NT_004686	AC098690	92810115	1	19456	0	8405	27861
S/G/Y/R/B/O	NT_004686	AC093563	92777509	1	chr1	NT_004686	AC027738	92602284	1	43256	6968	0	50224
S/G/Y/R/B/O	NT_004686	AC093563	92777509	1	chr1	NT_004686	AC073301	91832511	1	36005	5543	8273	49821
S/G/Y/R/B/O	NT_004686	AC093563	92777509	1	chr1	NT_004686	AL049743	92604687	3	41652	0	0	41652
S/G/Y/R/B/O	NT_004686	AC093563	92777509	1	chr1	NT_004686	AL109744	92600008	1	10121	0	0	10121
S/G/Y/R/B/O	NT_004686	AC093563	92777509	1			AL356236	92600008	1	29942	0	0	29942
S/G/Y/R/B/O	NT_004686	AC093563	92777509	1			AL583862	92600008	1	18562	16092	8066	42720
S/G/Y/R/B/O	NT_004686	AC098690	92810115	1
S/G/Y/R/B/O	NT_004686	AC098690	92810115	1	chr1	NT_004302	AC013557	78697222	1	23277	0	1748	25025
S/G/Y/R/B/O	NT_004686	AC098690	92810115	1	chr1	NT_004302	AC019177	78779904	1	10005	0	0	10005
S/G/Y/R/B/O	NT_004686	AC098690	92810115	1	chr1	NT_004686	AC019187	92611486	3	80627	0	0	80627
S/G/Y/R/B/O	NT_004686	AC098690	92810115	1	chr1	NT_004686	AC027738	92602284	1	32900	0	0	32900
S/G/Y/R/B/O	NT_004686	AC098690	92810115	1	chr1	NT_004686	AC073301	91832511	1	34994	0	1144	36138
S/G/Y/R/B/O	NT_004686	AC098690	92810115	1			AL356236	92777509	1	58826	0	0	58826
S/G/Y/R/B/O	NT_004686	AC098690	92810115	1			AL583862	92777509	1	15961	10781	8163	34905